Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq71882 201 2e-46 >seq71882 Length=3594170 Score = 201 bits (222), Expect = 2e-46 Identities = 234/316 (74%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 8860 GAGTTCCGCGTTGGAAACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAAT 8919 ||| || || | || ||| | ||||| | || ||||| |||||||| || | || || Sbjct 2487677 GAGCTCTGCATCGGGAACACTGAACGACGTGAAAGGACAGCCCTTCACGTTAGTGCAGAT 2487618 Query 8920 GAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCT 8979 ||| ||||| |||| ||||| || | ||| | |||||||| || || || || || || Sbjct 2487617 GAGAGACTGGATGGAGGCGGTGTTGATGATCTGAAAACCTACTTCTCCTCCAAAAGTACT 2487558 Query 8980 GGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGG 9039 || ||||||||| ||| ||||| ||| ||| ||||||| ||||||||||| || || Sbjct 2487557 CGGCTTCCAGTACTGCGGCGAGCATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGG 2487498 Query 9040 AGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGAT 9099 ||| |||| || | ||| |||| |||||||| || | || || || ||||| || | Sbjct 2487497 AGCTCCCATTTCCACCATGGTCTCCCCGAAGATAGCGTCTGGCCGAGGCTTTTCCACCAG 2487438 Query 9100 GAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGC 9159 || | | | || || || | ||| |||| ||| || |||||| |||||||||| ||||| Sbjct 2487437 GAGGGCGGGATACAGCTCCATAGCGTCGATGTCTCCGTAGAGGCCTTCCAACTCTGCAGC 2487378 Query 9160 TATCTCCTTCTCACCT 9175 ||| |||||||| ||| Sbjct 2487377 TATTTCCTTCTCTCCT 2487362 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||| |||||||| |||| ||||| || || || |||| |||||||| ||| Sbjct 2485923 GTCTGGAACAGGCGCTCGTCATCCCACTCCGGATGCTCCCGTCTGAGCACATCGCACACC 2485864 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 |||||||| || | |||||| ||||||||||||||||| | ||| ||||| | || || Sbjct 2485863 CTGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCGGGCACCAGGCCGAAG 2485804 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| || |||||||| | || || | ||| | || | ||| ||| Sbjct 2485803 ACCTCCTGGCCCACCGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGC 2485744 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 |||||||| |||||||| | || || ||||| || |||||||| |||| Sbjct 2485743 ACCTGGGTGTCTTTGACTGACGGAGGGTACATCTCTCCGTCAATGACCT 2485695 Score = 96.9 bits (106), Expect = 5e-15 Identities = 194/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||||||| | ||||| || ||||| || |||| | |||||| | | | || Sbjct 2486441 CCAGCAATCTGTTTGGTGAATGACTCAACAAACTGGGTAAGTCCGTGTTCCACTAACATA 2486382 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || || | | |||| ||| || |||| ||| Sbjct 2486381 GAGTTGTTGTAGAGAAACTGCTGAAAGTTGTACTCTTGGTCATGGATTTGAAAGGTGTCA 2486322 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| || || ||||| | || || |||||||||||| Sbjct 2486321 GGCAGAAGGGGATGCCAGTGGTAGAGCGTGTTAAACTCAGAAGCAATGCGGTTCTGGTAC 2486262 Query 9616 TG--AAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| || || | ||| |||||||| | || | |||||| || |||| Sbjct 2486261 TGGAAATGTTGGT--TAAAAAGCAGCTCTGGGTCAAACTTCAGTTTGAAGTGATAACCGC 2486204 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||| ||||| | | |||| ||| || || ||||| || Sbjct 2486203 TCAAGTGCTGTACATAGTCTTCAATTACAATCTTTATCGTTTCTCC 2486158 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| || ||| || |||||||| ||||| ||| | ||| | | | ||| Sbjct 2484645 CTTACCCCATGGGACAGTCCAGTGGTGAAAGCAGGTCCACGCTTCGGATCTGACTTGAAA 2484586 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || || || || ||||| || | || || || ||||||| || ||||| ||||| || Sbjct 2484585 AACTGATGGGTGAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCTTGGGGGTCA 2484526 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | || |||||| |||| || || ||||||| || || Sbjct 2484525 GGGATGAACTTTCTTCTTAGAAGAACTTTTTCCAGAACCTCATTTGAATCAGGAAG 2484470 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| | || ||||| || || || Sbjct 2484117 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCGGCCACAGGAGGGAGGACTCGGGTG 2484058 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||||||| | || ||||||| Sbjct 2484057 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCAAAGTCCGAGTTGTAAGTT 2483998 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||||| || | || |||||| Sbjct 2483997 GGAGGACTGTCAACCAAATGTGATCTGGCT 2483968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723051947582000