Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq70448 131 4e-25 seq71171 125 2e-23 seq72916 120 7e-22 >seq70448 Length=578665 Score = 131 bits (144), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || || | |||||||||| | ||| | |||||| Sbjct 511429 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCT 511370 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 511369 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 511310 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||| || | | || || |||| ||||| ||| Sbjct 511309 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 511250 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||||||| || || |||||| Sbjct 511249 TTGCCAGTCAGGGTCTTCACAAAGATCTG---CATTTT 511215 >seq71171 Length=10874107 Score = 125 bits (138), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| ||||| || || | |||||||||| | ||| | ||||| Sbjct 9049407 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCG 9049348 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 9049347 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9049288 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||| || | | || || |||| ||||| ||| Sbjct 9049287 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 9049228 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||||||| || || |||||| Sbjct 9049227 TTGCCAGTCAGGGTCTTCACAAAGATCTG---CATTTT 9049193 >seq72916 Length=12258079 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| | || ||| | |||||| Sbjct 7817418 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817359 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || || || || Sbjct 7817358 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817299 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || || | ||||| ||| Sbjct 7817298 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817239 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 7817238 TTGCCAGTGAGGGTCTTCACGAAGATCTG 7817210 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || |||||||| |||| ||||||||| | || ||| | || ||| Sbjct 7817646 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 7817587 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || || || || Sbjct 7817586 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817527 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || || | ||||| ||| Sbjct 7817526 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817467 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 7817466 TTGCCAGTGAGGGTCTTCACGAAGATCTG 7817438 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || |||||||| |||| ||||||||| | || ||| | |||||| Sbjct 7817874 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817815 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || || || || Sbjct 7817814 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817755 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||| || || | ||||| ||| Sbjct 7817754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817695 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 7817694 TTGCCAGTGAGGGTCTTCACGAAGATCTG 7817666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177792808356910