Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq71278 154 6e-32 seq70126 131 7e-25 seq71536 116 1e-20 >seq71278 Length=4079834 Score = 154 bits (170), Expect = 6e-32 Identities = 203/283 (72%), Gaps = 9/283 (3%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || |||||||||||||| ||| | || || ||||| |||| Sbjct 2977852 ATGCCGTGATAACAGTCCCTGCTTATTTCAATGACTTGCAAAGACAGGCCACTAAGGATG 2977911 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || |||| | ||||| ||| | | ||||||||||| ||||| ||||||| Sbjct 2977912 CTGGCCAGATATCTGGACTGAATGTGCTTTGGGTGATTAATGAACCAACAGCTGCTGCTC 2977971 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || ||||| |||| |||| | ||||| |||| ||| |||| ||||| Sbjct 2977972 TGGCCTATGGTCTAGATAAAT---------CTGAAGACAAAATAATTGCTGTATATGATT 2978022 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | ||||| |||||| ||||| |||| | || |||| | | || ||||||||||| | Sbjct 2978023 TAGGTGGTGGAACTTTTGATATTTCTATCCTGGAAATTCAGAAAGGAGTATTTGAAGTGA 2978082 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | | |||||||| || ||| |||| |||||||| |||| Sbjct 2978083 AATCTACCAATGGGGACACTTTCTTAGGTGGTGAAGACTTTGA 2978125 >seq70126 Length=1161334 Score = 131 bits (144), Expect = 7e-25 Identities = 198/283 (70%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || | |||||||||||||| |||| | || | ||||| |||| Sbjct 148389 ATGCTGTGATAACAGTCCTTGCTTATTTCAATGACTCACAGAGACAGGACACTAAGGATG 148330 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || |||| | ||||| |||| | ||||||||| | ||| | ||||||| Sbjct 148329 CTGGCCAGATATCTGGACTGAATGTGCTTCACGTGATTAATGAATCAACATCTGCTGCTC 148270 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | || ||||| |||| |||| | ||||| |||| ||| |||| |||| Sbjct 148269 TGGCCTATGGTCTAGATAAAT---------CTGAAGACAAAATAATTGCTGTATATGATG 148219 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 | ||||| |||||| ||||| |||| | || |||| | | || ||||||||||| | Sbjct 148218 TAGGTGGTGGAACTTTTGATATTTCTATCCTGGAAATTCAGAAAGGAGTATTTGAAGTGA 148159 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | | |||||||| || || |||| |||||||| |||| Sbjct 148158 AATCTACCAATGGGGACCCTTTCTTAGGTGGTGAAGACTTTGA 148116 >seq71536 Length=14703830 Score = 116 bits (128), Expect = 1e-20 Identities = 439/677 (65%), Gaps = 24/677 (4%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||||| || |||||||||| ||||||| || ||||| || || | | | |||| || Sbjct 11865639 GCAATCGGCATTGATCTTGCTACCACCTACTCCTGTGTGGGGGTCTTCTAGCATGGGAAA 11865580 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCT--TCATGGGTAAGTTTT- 451030 || || || || || ||| | || ||| |||| || || | ||| | ||||| Sbjct 11865579 GTGGAGATGATTGCCAATAATCAGGGAAACTGAACCACCCCAGGTTATGTG---GTTTTC 11865523 Query 451031 ACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAA--TCAATGGTAAATTCAAATGCCA 451088 || || | || |||| | | | ||||| ||| |||| ||| | | || Sbjct 11865522 ACCGACACTAAACGACTGATCAGAGATGCTGCAAAAAGTCAAGTTGCAATGAACCT--CA 11865465 Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148 |||||||| | ||||| || | | | ||||| ||| | |||||||| | ||| | Sbjct 11865464 CCAACACAGTTTTTGATGTCAAGCATCTGATTGGATGTAGATTTGATGATGCTGTTGTCC 11865405 Query 451149 AAAA-AGAGAAAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | | | || ||| | ||| ||| || |||||| | | | | ||| | | Sbjct 11865404 AGTTGATATGAAGCATTGGCCCTTC--ATGGTG--GTAAATGATGCAAGCAGACCCAAGA 11865349 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||||| | |||| ||| || || || | || ||| || | | | || ||||| | Sbjct 11865348 TTCAAGTCCAATATAGAGGAGAGACAAAGAGCTTCTATCCAGAGGCAGTATCTTCTATAG 11865289 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 | || | || ||||| |||| ||||| | | |||| | |||| |||| | Sbjct 11865288 TGCTGATAAAGATGAAGGAAATTGCAGAGGCTTTTCTTGGGAAG--ATTTACCAATGCTG 11865231 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | ||||| || ||||| || ||||| | || | |||||||| |||||||| ||| Sbjct 11865230 TCGTCACTGTGCCAGCTTACTTTAATGACTCTCAGCATCAAGCAACCAAAGATGCTGGAA 11865171 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCAT 451445 ||||||| | | | ||| ||| ||||||| ||||| || ||||| ||||||| | | Sbjct 11865170 CCATTGCTGATCTTATTGTACTTAGAATTATCAATGAGCCAACAGCTGCTGCTCCTACTT 11865111 Query 451446 ATGGACTAGGAAAATCAAAAGAAAC-AGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 |||| ||| || |||| || |||| |||| | | | ||| |||| || Sbjct 11865110 ATGGTTTAG----ATGAAAACTTTTGAGCTGAAAGAAATGTGCTGATTTTTTATTTAGGA 11865055 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| |||| ||| | || | ||||||||||| | ||||| ||||| | Sbjct 11865054 GGTGGCACTTTTGATGTTTCAATCCTCACCATTGAAGATGGAATCTTTGAGGTAAAATCT 11864995 Query 451565 ACCAATGGTGATACTCA 451581 || ||| || ||||| Sbjct 11864994 ACACCTGGAGACACTCA 11864978 Score = 96.9 bits (106), Expect = 1e-14 Identities = 301/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 |||||| || | ||||| | | ||||||||||| |||||||| ||| ||||||| ||| Sbjct 11864600 GGAAAAGAATTGAATAAGAACATCAATCCTGATGAGGCTGTTGCTTATAGTGCTGCTGTT 11864541 Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAAT-TAGGAGATATTCTGTTAGTAGA 452085 || ||||| || || | || | | | || ||||| | |||| | ||| | | || Sbjct 11864540 CAGGCAGCCATCCTCTCTGG-AGACAAGTTGGAAAATGTTTAAGATTTGCTGCTTTTGGA 11864482 Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA 452145 || | |||| || ||||| ||||||| ||||||||| | ||||| | || || Sbjct 11864481 TGCCATGCCTCCTTCCCTTGGTATTGAAACTGCTGGTGGAGTCATGACAGTCCTCATCAA 11864422 Query 452146 ACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCA 452205 | | || | |||||| ||| | | || | || | ||| |||| ||||| Sbjct 11864421 ATGCAATGCTACCATTCCTACCAAACAAACACAGAACTTCACTACCTACTGTGACAACCA 11864362 Query 452206 ACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAA 452265 || ||||| ||||||||| | ||||| || |||| ||||| ||||| || Sbjct 11864361 GCCTGGTGTGCTTATTCAAGTATAAGAAGGTGAGTGTGCCATGACTAAGGATAACAACCT 11864302 Query 452266 ACT--AGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATT 452323 ||| | || | |||| | | || |||| || | || | |||| ||| Sbjct 11864301 ACTTGACAAGCTTGAACTCAT--AGGTATACCTCTGGCACCCCGAGGTGTTACTCAGATT 11864244 Query 452324 GAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATC 452382 || | ||| |||| ||||||| ||||| || || | ||| ||| ||||| || | Sbjct 11864243 GAGGTCACCATTGATATTGATGCCAATGGCATCCTCAGTGTCTCTGCTGTTGACAAGAGT 11864184 Query 452383 ATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAA 452421 | ||||| | | | || ||||| || |||||||| || Sbjct 11864183 ACAGGGAAAGTGA-ACAAGATTACCATCACTAATGACAA 11864146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973826692850840