Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq72916 105 4e-18 seq70448 98.7 6e-16 seq71171 93.3 3e-14 >seq72916 Length=12258079 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | | |||| || | ||| || ||||| ||||| ||||| || Sbjct 7817889 CCTCCCCTCAGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817830 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 7817829 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817770 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || || | Sbjct 7817769 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGTTCCA 7817712 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 7817711 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 7817397 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 7817338 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 7817337 ATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 7817280 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || |||| ||| ||||| || || ||||| ||||||| Sbjct 7817279 TCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 7817220 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 7817219 CGAAGATCTGCAT 7817207 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||||||| || || ||||| Sbjct 7817625 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAG 7817566 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 7817565 ATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--AT 7817508 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || || || |||| ||| ||||| || || ||||| ||||||| Sbjct 7817507 TCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 7817448 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 7817447 CGAAGATCTGCAT 7817435 >seq70448 Length=578665 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||| ||||| || ||||||||||| || ||||| ||| Sbjct 511444 CCACCCCTCAGACGGAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAA 511385 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 511384 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 511325 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || || || ||||| || || || || || | |||| || ||| | Sbjct 511324 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCCA 511267 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 511266 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 511215 >seq71171 Length=10874107 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || ||||||||||| || ||||| | ||| | || |||| ||| Sbjct 9049404 ACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCC 9049345 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | || || || || Sbjct 9049344 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 9049285 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | |||| || ||| || || | ||| ||||| | Sbjct 9049284 ATCTTGGCCTTCAC--ATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCT 9049227 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||||||||||||||| || Sbjct 9049226 TGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 9049193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324337932847440