Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq72823 102 9e-17 seq71464 93.3 5e-14 >seq72823 Length=4236179 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| |||||||| || | || ||| |||| |||| |||||| || | Sbjct 482170 TCCAACCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCTGCAATATGGATGT 482229 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || ||||||||||| || ||||||| |||||||||||| | | || | Sbjct 482230 TCAAAGACTGGCTCTGATCAATGAAAGCACCTCGATCAGCTGCCATCTTGAGAACAGTTT 482289 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| ||||| ||||||| || || | ||| || || Sbjct 482290 TCTGAGAGATTTCCCACACTGTCTTATAAAGCTGCTTCAGGTCATCAGG 482338 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || || || ||||| ||||| || || Sbjct 488520 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 488579 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || || ||||||||||| || |||||||| | |||| | ||| || Sbjct 488580 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 488639 Query 47448 TTTCTTACTCCATAT 47462 ||| ||| |||||| Sbjct 488640 TTTTTTATACCATAT 488654 >seq71464 Length=6720225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT---CATTACTCCCAT 18668 |||||| ||| ||||||||| ||||||||||||| ||| | | ||| |||||||| Sbjct 4555464 TTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCT---GTAGGACTGGACATGACTCCCAT 4555520 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | ||||| ||| | ||||| || |||||||| || || || || || | || ||| Sbjct 4555521 CCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATT 4555580 Query 18729 TTCCATAAAATCAAATGGATTTT 18751 ||||| || ||||| ||||||| Sbjct 4555581 CTCCATGAAGTCAAACGGATTTT 4555603 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||| || ||||| || | |||||||||||||| | ||| | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || || |||||||| || ||||| || || ||||| | Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 19103 CAAC 19106 | || Sbjct 4556772 CGAC 4556775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561583720117200