Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq70384 235 4e-57 seq72168 125 6e-24 seq73533 111 1e-19 seq70139 91.5 1e-13 >seq70384 Length=4945429 Score = 235 bits (260), Expect = 4e-57 Identities = 404/579 (70%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 29813 CGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCC 29872 || ||| |||||| | || || |||||| | || || || || || | | || | Sbjct 1456061 CGCGATTCAGGTAAATATGTGCATCTCCCCAAATATGTACGAAGTCACCTGTCTGCAGGC 1456002 Query 29873 CGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCC 29932 | |||| | |||| | ||||| ||||| || | ||||||| || || ||||| | | Sbjct 1456001 CAGTGATGGGAGCGACTATGTAGGTGAGCAGGGTATAGCTGGAGACTTTGAAGGGCAGGC 1455942 Query 29933 CGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGT 29992 | | |||||||| | || |||||| ||| | || | ||||| | || ||||| Sbjct 1455941 CCTGGTCCATGTCCACAGAGAGCTGGTACAGCGGGCAGTACAGCTCCCAGTTCACCACGT 1455882 Query 29993 AAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCC 30052 | ||||| | | || |||||| ||||| || ||||| || | ||||| ||||||| Sbjct 1455881 AGAACTGGTAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGCTCTTTCGGGTTCC 1455822 Query 30053 AGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTT 30112 ||| ||||| ||||| | |||||| || |||||| | ||||| || | | || | Sbjct 1455821 AGGTGCACATGATGAGTCTCCTGTCGTCAGGGTTGGTTTTGATGGTGTTGATCACCTTCT 1455762 Query 30113 GCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGA 30172 ||||||| |||| || |||||||| |||| | ||| | |||| || || | || Sbjct 1455761 GCAGCTGGTCCATTCCTTGACCCGAGTAATCTGACTCGATGCCTTTGTAGTCAGCCCTGA 1455702 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AA 30230 ||| |||||||||||| || || || || |||||||| || || | || ||| | || Sbjct 1455701 AATACCTCCACTGGAAGCCATAAACGGGGCCCAGGTCCCCTTCCT-GATG-GCTGGAAAA 1455644 Query 30231 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30290 ||| ||| || ||||||| || | | |||| ||||||||||| | |||| | Sbjct 1455643 CCCCAGGCTGTTCAGGAAGTCTC-AGACCTGCTGGCATCCCAGATCTTCATGCCCT--TA 1455587 Query 30291 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGC 30350 | |||| ||||||| ||||| | || ||| ||||||||||||||||||| || | Sbjct 1455586 GAAGAGTTCTTTGG-CATTGTGCATCCCTTGATAAACCACAGCAGCTCCTCCAAAACACC 1455528 Query 30351 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30389 |||||| || || | ||||||| | || |||||||| || Sbjct 1455527 CTTCCAGAACACACACTTGGTCATCAGCAGGGGAAATTG 1455489 >seq72168 Length=9498425 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| |||||| | |||||| || || || | ||||||||||||||| ||||| Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||||||||| || | |||||| ||||| || || ||||| |||| | Sbjct 6792562 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 6792621 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || || || || | || |||||| ||||| || ||||| || Sbjct 6792622 ACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAG 6792665 Score = 122 bits (134), Expect = 7e-23 Identities = 130/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || ||||||||||| Sbjct 6796797 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTC 6796856 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267 || || | | | || ||| ||| ||||||| ||||||| ||| |||||||| Sbjct 6796857 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCA 6796914 Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||||| || ||||| || || ||||||| |||||||||||| Sbjct 6796915 TCCCAGATCTTCACACCCTTGGAAGACAGTTCTTTGGCGTTTGTGGACCC 6796964 >seq73533 Length=2840070 Score = 111 bits (122), Expect = 1e-19 Identities = 337/524 (64%), Gaps = 54/524 (10%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||||| ||| || || || ||| |||| |||||||| || | ||||| |||| Sbjct 2091919 TGGGAAAGG-TCTTGGTTCTGGCTGAAGCCGAGTTTTCAGCGGCTCAATGTGATTCAGGC 2091861 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || ||||||| ||||| ||||| | || || || |||| || | ||| Sbjct 2091860 AAATGTATATATCTCCCAAAGTGTGTACAAAGCCACCTGGCGGCAGGCCGGCGATGAGAG 2091801 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | |||| | ||||| || | |||||||| ||||| ||| |||| | ||| || Sbjct 2091800 CGACCATGCAGGTGAGCAGGGCGTAGCTGGTGATGTCGAAGCC-ACCCAGG---CCACGT 2091745 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 |||| | | |||||| ||| | || |||||||| || | |||| Sbjct 2091744 TCCCCTAGCGCTGGTACAGCCGGCAGGAGAGCTCCCCAT---TCAC-------------- 2091702 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064 ||| || | |||| |||||| |||||||| || Sbjct 2091701 --------CACCTAGAA-------------------CTTTCAGGTTCC-GGCGCACATGA 2091670 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | ||| | || ||| || | ||||| ||| | | || |||||||| |||| Sbjct 2091669 TGATTCTTCTGCCGTCAGGGCTGGTTTTGATGGTGTCGATCACTTTCTGCAGCTGGTCCA 2091610 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | || |||||||| |||| ||| | |||| || || || ||| |||||||| Sbjct 2091609 CTCCTTGACCCGAGTAATCTGAGTCCATACCTTTGTAGTCAGCCCCAAAAAACCTCCACT 2091550 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AAGCCCCTCTTGTC 30242 |||| || || || || | |||||| || || | | ||| | || ||| |||| Sbjct 2091549 GGAAGCCATAAACGGGGCACAGGTCCCCTTCCTGGC--GGCTGGGAAACCCCAGGCTGTC 2091492 Query 30243 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 30286 ||| |||||| ||| ||||||| | ||||||||| || |||| Sbjct 2091491 CAAGAAGTCTTGGGACCCGTTGGTATTCCAGATCTTCACGCCCT 2091448 >seq70139 Length=1650317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || ||||| || || ||||| ||| ||||| |||||| || ||| Sbjct 1356171 TTGAGTTCTCTACTTAGTACTACATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGG 1356112 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 1356111 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1356064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408245442582290