Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq74180 172 1e-37 seq73152 150 3e-31 seq74017 107 4e-18 seq73687 93.3 8e-14 seq72823 91.5 3e-13 >seq74180 Length=2196538 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || || ||| || ||||| ||||||||| |||||||| || Sbjct 696326 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGC 696267 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | ||||| |||||| || ||||| || | ||| || |||||| Sbjct 696266 TCCCGGAGCAGCCCGGCGGTGCTGGACAACCCCGCGTTCTCGGCCTTCAGTGTCTTCACC 696207 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| ||||| || |||| Sbjct 696206 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTAGCCGCCAGC 696147 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 696146 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 696087 Query 241625 GAC 241627 ||| Sbjct 696086 GAC 696084 >seq73152 Length=1214336 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||||||||| || |||||||| || ||||| | | |||||| | ||| Sbjct 433140 AGCACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCGGTGGACGCCAGC 433199 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||| || ||||||||||| |||| |||||||||||| Sbjct 433200 TCGGTGTTCTGGCTCTTGAGCGTCTTGACCTTCTCCTCCAGGCGCGAGATGCGTTCCAGC 433259 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 433260 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 433319 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 433320 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 433352 >seq74017 Length=2439271 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| ||| || ||||||| ||||||| || Sbjct 43651 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCTCTTCTTC 43710 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || || ||||| || || |||||||| | ||| ||||| ||||| || || Sbjct 43711 AGCCAGAAGATGGCGGCGAAGGACCCCGAGAAGAACACGCCTTCCACAGCCGCAAAGGC 43769 >seq73687 Length=1305591 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | | | ||| |||| ||| Sbjct 959975 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTCCTCTTCCTGCACTTGGAGGCG 959916 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || ||||||||||| |||||| |||||||||| Sbjct 959915 GCGATGCGGTTCCTCATGCGCTTCCTCTCAGCCTTGATGCGCTCCTGGGACTCCATGTCG 959856 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 959855 ATGGGGGAC 959847 >seq72823 Length=4236179 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 500813 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTCCCCAGGTTCTGTTGG 500872 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 500873 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCTGTCTG 500931 Query 213647 GGAC 213650 ||| Sbjct 500932 AGAC 500935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930662631923200