Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq74017 114 2e-20 seq71464 105 1e-17 >seq74017 Length=2439271 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| || |||| |||||||| |||||||| ||| | || ||| || || || || Sbjct 43784 GGGGAGAGGGTGGTGGCCTTTGCGGCTGTGGAAGGCGTGTTCTTCTCGGGGTCCTTCGCC 43725 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| ||| |||||| || || ||| |||||||||||| Sbjct 43724 GCCATCTTCTGGCTGAAGAAGAGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 43665 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 43664 ATCAGCAGAGACGAGG 43649 >seq71464 Length=6720225 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| || ||||| || ||||| || |||||| |||||| Sbjct 4556787 GGAGAGCGTGTGGTCGCCTTTGCGGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCG 4556728 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||| |||||||||||| | | |||||| ||||| || || |||||||||||| || Sbjct 4556727 TCCATTTTCTGGCTCAAGAA-ACGGGGACTGATGCCTGGCCTTACCTTTTCCAACGAACT 4556669 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 4556668 TATTAGCAGAGATGAGG 4556652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927977142851200