Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq74017 143 2e-28 seq70743 127 1e-23 seq69760 98.7 6e-15 seq73626 95.1 8e-14 seq72916 87.8 1e-11 >seq74017 Length=2439271 Score = 143 bits (158), Expect = 2e-28 Identities = 366/552 (66%), Gaps = 25/552 (5%) Strand=Plus/Plus Query 474330 CAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAG 474389 || |||| |||||| | || || | ||| |||||| | ||| | | |||| |||| Sbjct 1722 CAGTTGGCATTGATCTTGGCACCATCTACTCTTGTGTGGGTGTCTTCCTGCATGGGAAAG 1781 Query 474390 TAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG 474449 | || ||||| |||||||| || || || || || ||| |||||| |||| ||| Sbjct 1782 TGGAGATAATAGCCAATGATCAGGGAAACCAAAGCACCCCAAATTATGTTGCTTTCACTC 1841 Query 474450 AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATA 474509 | ||||||| ||| || |||||||||| | | |||||| |||| || || || | Sbjct 1842 ACACTGAACGTCTGATCAGAGATGCTGCAAGAAATCAAGTTGCAATGAACCCAACCAACA 1901 Query 474510 CTATTTTTGATGCTAAAAGAT-TGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| |||| | || || ||||||| | || ||||||||| | | ||||| || Sbjct 1902 GC--TTTGGATG-TCAAGCATCTGATTGGACATAGATTTGATGATGCTATAGTCCAGCCT 1958 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCA 474628 || ||| |||||||| || | |||| | || || || | ||| | | ||| Sbjct 1959 GACATGAAGCATTGGCCCTTCATGGTGCTGAACAATGCAGGCAGACCTAAGGTTCAAGTC 2018 Query 474629 ATACACGCAGGTGAAACTAAA---CAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | | || ||| || || || | | | | ||| || ||||| || || || Sbjct 2019 AAATACAAAGGAGAGACAAAGAGCCTCTATCTAGGGGAGCA----TCTTCTATTGTACTA 2074 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 | | ||||| ||| | | | |||||||| |||||| |||| ||| || Sbjct 2075 ACAGAGATGAAGGGAACTCCAGGTGCTTATCTTGGG-AAGAAG--ACTGCTGCCAAAA-- 2129 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||||| ||||| |||||||| | |||||||| |||| ||| Sbjct 2130 ---------GCTTACTTTAATGGCTCTCAGTGTCAAGCACCCAAAGATGCTGGAACCATT 2180 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||||||||| | | ||||| ||||| |||||||| || || ||||||||||| Sbjct 2181 GCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCTGCTGCTATTGCTTATGGT 2240 Query 474866 CTTGATAAGAAT 474877 | || || ||| Sbjct 2241 TTAGACAAAAAT 2252 >seq70743 Length=2714810 Score = 127 bits (140), Expect = 1e-23 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| ||||| || |||||||| ||||| ||||||||||| ||||||| Sbjct 1447785 ATGCTGTGGTCACTGTGCCAGCTTACTTTAATGACTCTCAGCGTCAAGCAACCAAAGATG 1447726 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||||||||| | | ||||| |||||||||||||| || || Sbjct 1447725 CTGGAACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAACCAACAGCTGCTGCTA 1447666 Query 474855 TTGCTTATGG 474864 |||||||||| Sbjct 1447665 TTGCTTATGG 1447656 Score = 102 bits (112), Expect = 5e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| ||||||||||| | || || || ||| ||||| | ||||| || |||| || Sbjct 1448755 TGCAGTTGGTATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTTTTCCAGCATGGGAA 1448696 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || ||||| ||||| || || || || |||| || ||| ||||| |||| || Sbjct 1448695 AGTGGAGATAATCGCCAACGATCAGGGAAACCGAACCACCCCAAGTTATGTCGCTTTCAC 1448636 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 || || || | || || ||||||||||| ||| |||||| |||| Sbjct 1448635 CGACACCGAGCGACTGATCGGAGATGCTGCGAAAAATCAAGTTGCA 1448590 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 ||||| ||||| ||| ||||| | ||| | || ||| || |||||||| ||| | Sbjct 1446347 ACTAAGGATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCACCCCGT 1446288 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| |||||||| || |||||||||||||| ||||| || || ||||| || Sbjct 1446287 GGTGTTCCTCAGATTGAAGTCACCTTTGATATTGATGCCAATGGCATCCTCAATGTCTCT 1446228 Query 476171 GCTTGTGATAA 476181 ||| ||| || Sbjct 1446227 GCTGTTGACAA 1446217 Score = 86.0 bits (94), Expect = 4e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| |||||||||||||| |||||||| | ||||| |||||| ||||| || | | ||| Sbjct 1447670 AGCAGCTGTTGGTTCATTGATAATTCTAAGTACATTAAGACCAGCAATGGTTCCAGCATC 1447729 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | ||||| || || || | |||||||| ||||| || || || | ||||| || Sbjct 1447730 TTTGGTTGCTTGACGCTGAGAGTCATTAAAGTAAGCTGGCACAGTGACCACAGCATT 1447786 >seq69760 Length=5087377 Score = 98.7 bits (108), Expect = 6e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || |||||||| ||||| || ||||| ||| || | |||||||| ||| Sbjct 4872023 CCATCACGGCCAGCTCTACCAATTTCCTGGTAATATGATTCCATTTCCTTAGGTGCACCA 4871964 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGC 627887 ||||| || ||| | ||||| ||||||||||| ||||||||||| || || || || Sbjct 4871963 TAATGAATGACTTTGCGAACATCAGATTTATTAATGCCCATTCCAAAAGCTATAGTGGC 4871905 >seq73626 Length=12063405 Score = 95.1 bits (104), Expect = 8e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| ||||| || |||| || ||||| | ||||||||| ||||||| Sbjct 6878367 ATGCTGTGGTCACTGTGCCAGCTTACTTTAGTGGCTCTCAGCATCAAGCAACCAAAGATG 6878426 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||||||||| | | ||||| || | |||||| | || || Sbjct 6878427 CTGGAACCATTGCTGGTCTTAATGTACTTAGAATTATCAACAAGCCAACATCTGCTGCTA 6878486 Query 474855 TTGCTTATGG 474864 |||||||||| Sbjct 6878487 TTGCTTATGG 6878496 >seq72916 Length=12258079 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || || |||||||| || || ||||| Sbjct 7817362 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTT 7817303 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || || || ||| || || || ||||| || Sbjct 7817302 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGAT 7817243 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 7817242 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 7817210 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || || |||||||| || || ||||| Sbjct 7817818 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTT 7817759 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| |||||| || || || ||| || || || ||||| || Sbjct 7817758 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGAT 7817699 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 7817698 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 7817666 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || || |||||||| || || |||||| Sbjct 7817589 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTG 7817530 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| |||||| || || || ||| || || || ||||| || Sbjct 7817529 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATG 7817470 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 7817469 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 7817438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264973667710040