Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq69793 282 5e-71 seq71536 163 3e-35 seq72886 104 3e-17 seq71208 82.4 9e-11 >seq69793 Length=3061426 Score = 282 bits (312), Expect = 5e-71 Identities = 658/984 (67%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||||||| |||| ||| || | ||| || || | || || ||||| || Sbjct 8641 CAGATGCTCATCCAGACACTGGATGGCAAAGAAGTCGACATCCACATCAAACTTATTGGC 8700 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| | | | |||||| || || || | || ||||| || || Sbjct 8701 GAAAAAGTGGTGTTTGCCC---AACATCCAGGCCAAATCACCAGCTCCAAACACACACAC 8757 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || | ||| ||||||| ||| || || || | || || || || |||||||| Sbjct 8758 ACTGCGCACGTGGACGCCGTCGCAGGGTGGATAGGGTGCGCCCTTGTTAACATCACCTTC 8817 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | | ||||| ||| || |||||| ||||| Sbjct 8818 AAAGTATTGCCACTTGACAAACCTGGCAACAGACTGCAAGTCAGAAAGGTCGTACTTGTA 8877 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| ||| | | || || | |||| || | || | ||||||||| |||| || Sbjct 8878 GCTCAAGGGCAGAGAGCCTGGGGCCTCGGGGATCCTTTGGATGGTGGCCCAGAGGTACTC 8937 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCA 160410 || |||||||||||||| | | ||| |||||||||| || | | | | || | Sbjct 8938 ATCCGGGCTGTACGTGTCGTGCGCCCACTCCATGAACT-TCTGCATGTCTCCGTTTTCTA 8996 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | ||| | | || |||| ||||| ||||| ||||| ||||| | ||| Sbjct 8997 GCACATAGCCCACGAATGCCCTACTCACTACAAAATACGCACTGCCTGAGAAAAGAGGTG 9056 Query 160471 TGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| ||| ||| ||||| | || |||| |||| ||| | || | Sbjct 9057 TTTTCAGAGGAGGC-TGTGCTTTGGGGTTCCCCGTGTCCATCACCCGTCCATCGACGACT 9115 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 || | |||| |||||||| | || || | |||||| ||||| || || || Sbjct 9116 GCATAATGCTTTTTCCACCTTTCTGCTTTATGAGATGGCATTTTCTCCGTTTCCAGGTTG 9175 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || || ||| || |||| | |||| || || ||||| || || | ||||| Sbjct 9176 TTTTCGCCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTAGTTTTAACGGGAAAA 9235 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || | || || | || |||| ||||||||| | | || | || |||||| || Sbjct 9236 TCCATGCCACAAAGATTGATCAAGTACTTCCAGTCTGTGCCCCTACTGTAGAGGTCCTTC 9295 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || |||||||| || ||||| || || || || ||| |||| || | | Sbjct 9296 ATGCAGTTGAGGTCGGCCTGCACCCGACTCCATGATGCATAGACCACGCTCTCCAGCTGA 9355 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA-T 160828 |||||||||||||| || ||||||| ||| | || ||| ||| | ||| | || | Sbjct 9356 CTGGCCACAAAGACATTCCCGAAACAGGACGCAATGCCCTTCACTG-CAGCTATAAAAGA 9414 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | |||| |||||| || | || || | ||||||||| || |||||||| Sbjct 9415 GTCCTCTGATTTTCTGTCCACATGGATACAGTAGAAATTCTGAGGCATATAAATGGCCCT 9474 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | ||| || || ||||| || || || Sbjct 9475 TAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATAGGCAATTGGGAA 9534 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 | |||||| ||| | || | || | ||| || ||| ||||||| ||| | Sbjct 9535 GCCTTCCTCCTCTTTACTAAAGGGTTCCGTAATGTATTTGCGCATCTTGATGAAAGAGGT 9594 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 ||| || | ||||| |||||||| Sbjct 9595 ACAGTCACTTGTCATATTGATATA 9618 >seq71536 Length=14703830 Score = 163 bits (180), Expect = 3e-35 Identities = 230/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || || |||||||| ||| Sbjct 9338722 TAGAGGGTAAGGCAGGGTGTTCCTGAGATCTTTCCAGAGCCAAAGGTATTGAAGAGACAC 9338781 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| || || ||||| || || | | ||| || ||| Sbjct 9338782 ATGTAACAACCTTCATCCTCCAGTGTTGTGTTCCAGAAGGTGATGGCTGATTTGTGGAAT 9338841 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | || ||||| | |||||| || ||||| || |||||| Sbjct 9338842 CCCAGCTCGGTGATGTTTACCCTGTCCTTATAGGCAGGTTGGACCACAACCCCATGGTTC 9338901 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 || ||| ||||| ||||||| || ||||| | ||||| | |||||||| || || || Sbjct 9338902 TCACTGTAGGTGACCATGTTTTCTGGGCTTATAGCCTTCTTTTTCTGCCATGTCACAATT 9338961 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | || ||||| ||||| || | | || || ||||||||||| | | Sbjct 9338962 AAGACTTCCTGGGAAGTTTGCAGAGAACAGCTTAAGGTTGCTGGTGTGTTCAGCAGCTTT 9339021 Query 168450 CGCTCATCTTGAGTTACGACCTG 168472 | ||||| || || || || || Sbjct 9339022 CTTTCATCCTGGGTCACCACTTG 9339044 Score = 120 bits (132), Expect = 4e-22 Identities = 150/205 (73%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 167898 GTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTT 167957 || ||||||||||| || || ||| ||| ||||||| || || || |||||||| Sbjct 9336248 GTCACAGTTCCCAAGTGCAGGACCAGGCAGGTCACCTCA---TTCCCAACCTGACTCTTG 9336304 Query 167958 GGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTT 168017 | |||||| || | | |||||||| ||| ||| || ||||| ||||| ||||| | Sbjct 9336305 GCATCTTTGACCCGGAGGATGCTAGTGACAGATGTGGTCCCATTACGATGCAAAACACTC 9336364 Query 168018 TTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGT 168077 | || || |||||||||||||| || ||||||||| | || | ||| || || || Sbjct 9336365 TCAGTACTATTCTCAATCCCTGACCCACTGACCTTCCAGGAGATGAAAGGTGCTGGGCGG 9336424 Query 168078 GCTGTAGCAGAGCAGGTAATATTTA 168102 || || |||||||| || || |||| Sbjct 9336425 GCAGTGGCAGAGCAAGTGATGTTTA 9336449 >seq72886 Length=1232623 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 176231 TAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGG 176290 ||| || || |||| |||| || |||| |||||| | ||||| ||||||| | | Sbjct 683656 TAGGTACCTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCAGC 683597 Query 176291 TGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGC 176350 |||||| || || ||||| |||| ||||| ||||| | ||| | ||||| | | || Sbjct 683596 TGGAATATAATTCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGAGCCAGC 683537 Query 176351 TAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGC 176410 || || | |||| |||||||| ||||| || |||| |||||||||||||||| Sbjct 683536 CAAGAAAGCATTATAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAGTTTTCAAAAGA 683477 Query 176411 TAAATAGAACTTACA 176425 | ||| || ||||| Sbjct 683476 GAGATAAAATTTACA 683462 >seq71208 Length=22231620 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 160836 GCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAAC 160895 |||||| |||||||||||||| || | ||||||||| | |||||||||||| | | Sbjct 8735513 GCCTTTTCATCCACGTGCACGCAGTAGACATTCTGAGGCATGAAGATGGCCCTGAAGAGC 8735454 Query 160896 CTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTC 160955 ||| | || | || | || |||||||| || || |||||| | |||||||||| | Sbjct 8735453 CTCGCAAAGGTGTCAAAATTGTGATGGATGACCATGACGTAGGCCAGAGGAAACTCGGCC 8735394 Query 160956 TCCTC 160960 || || Sbjct 8735393 TCTTC 8735389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576680005114800