Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq70448 84.2 3e-11 >seq70448 Length=578665 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || ||||||| || || || || | || || || Sbjct 511215 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 511274 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| ||| || ||||| || || || |||||||||||||| ||||| || Sbjct 511275 AGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 511334 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || | || | ||| || |||||||| |||||| | | ||| | || || || Sbjct 511335 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 511394 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 ||||| |||||| | || ||||| Sbjct 511395 AATATTCAGAAAGAGTCTACTCTTCA 511420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731188340068000