Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq70448 95.1 2e-14 seq71171 86.0 1e-11 seq71311 84.2 4e-11 >seq70448 Length=578665 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | ||||| |||||| ||||| || ||||| Sbjct 511444 CCACCCCTCAGACGGAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAA 511385 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 511384 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 511325 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || ||||| || | ||| | || || Sbjct 511324 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 511265 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| | || || | ||| ||||||||||| Sbjct 511264 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 511215 >seq71171 Length=10874107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||| | | || | || | ||||| |||||| ||||| || |||| Sbjct 9049422 CCACCCCTCAGATGAAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGA 9049363 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 9049362 AGAGTGCGGCCATCGTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 9049303 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || ||||| || | ||| | || || Sbjct 9049302 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACC 9049243 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| | || || | ||| ||||||||||| Sbjct 9049242 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 9049193 >seq71311 Length=7776501 Score = 84.2 bits (92), Expect = 4e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||| || ||| | | |||||| || | ||| |||| |||| ||| ||||||||||| Sbjct 2853810 TCTTTTGA-ATACTGTCATCAGACAAAGCACGTCCATCTTCCACTTGCTTACCAGCAAAT 2853752 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | || || |||||||| || |||||||| ||||| | || || | |||||||| Sbjct 2853751 ATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAGATCTTGGTCTTTACATTT 2853692 Query 192466 GTTATAGAATC 192476 ||||| ||| Sbjct 2853691 TCTATAGTATC 2853681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983537381935500