Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq71171 84.2 2e-11 >seq71171 Length=10874107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 107542 ATAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCG 107601 |||| |||| |||||||| || ||||| || || | || ||||| ||||| ||| | | Sbjct 9049183 ATAACAGGTC-AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGG 9049241 Query 107602 AAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661 | |||| | | ||||| | | | || || ||||| |||||||||||| Sbjct 9049242 AGGTGGAGCCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCA 9049301 Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721 | || || |||||||| || || | ||| || || |||||||| || | | || Sbjct 9049302 TCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTC 9049361 Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 | | |||||||| ||||| || |||||||| | ||| |||| Sbjct 9049362 TTCCTGACTACAATATTCAGAAAGAGTCTACTCTTCACCTGGT 9049404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398513514228970