Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq72916 149 1e-30 seq71311 96.9 7e-15 seq72582 87.8 4e-12 >seq72916 Length=12258079 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| || || | |||||| || || || ||||| || || || || || Sbjct 7817661 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817602 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | |||||||| || || || ||||||||||| || || || || || ||||| Sbjct 7817601 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817542 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| || || || ||| | ||||| || Sbjct 7817541 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 7817482 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| || || |||||||| Sbjct 7817481 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| || || | |||||| || || || ||||| || || || || || Sbjct 7817433 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817374 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| || || || || || ||||| Sbjct 7817373 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817314 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| || || || ||| | ||||| || Sbjct 7817313 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 7817254 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || |||||||| || | ||||| || || ||||||||| Sbjct 7817253 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 7817206 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| |||| ||| || || | ||||| || || || ||||| || || || || | Sbjct 7817891 TACCTCCCCTCAGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 7817832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || || || || || |||| Sbjct 7817831 ACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 7817772 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| ||||| || || ||||| || || || ||| | ||||| | Sbjct 7817771 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCA 7817712 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 7817711 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 >seq71311 Length=7776501 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 82604 TAAG-TGCAGAGTAGA-TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || || || || |||||| || ||| | | |||||| | | | || ||||| Sbjct 2853828 TAAGATGAAGGGTGGACTTCTTT-TGAATACTGTCATCAGACAAAGCACGTCCATCTTCC 2853770 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||| || |||||||| || || ||||| ||||| ||||| |||||||||||||| | Sbjct 2853769 ACTTGCTTACCAGCAAATATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAG 2853710 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||| | ||||||||||| || ||||| Sbjct 2853709 ATCTTGGTCTTTACATTTTCTATAGTATC 2853681 >seq72582 Length=2129515 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| ||||| || |||||||| | |||||||| ||||| ||||| ||| ||||||| Sbjct 2081922 GTCTTCCAGTTGCTTCCCAGCAAAT-TAAGTCTTTGCTGATCAGGAGGAATTTCTTCCTT 2081980 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 || ||||| || || ||||||||||| | |||| Sbjct 2081981 ATTCTGAATGTTGGCCTTTACATTTTCTGTTGTAT 2082015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980887121933470