Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq74456 105 9e-18 seq71474 105 9e-18 seq71208 105 9e-18 seq72916 104 3e-17 seq71690 86.0 8e-12 >seq74456 Length=5729656 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1065997 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1065938 Query 8717 CCCCGACGAGGAGCAG 8732 |||||||| |||| || Sbjct 1065937 CCCCGACGGGGAGGAG 1065922 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1065996 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1065937 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 1065936 CCCGACGGGGAGG 1065924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1065925 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1065984 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1065985 TACTAACGAGGA 1065996 >seq71474 Length=7097603 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 3337167 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 3337108 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 3337107 CCCCGACGGGGAG 3337095 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1283193 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1283134 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1283133 CCCGACGGGGAG 1283122 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3337166 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3337107 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 3337106 CCCGACGGGGAGG 3337094 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 139347 CCACAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAA 139406 |||| |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||| Sbjct 1283116 CCACGTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAA 1283175 Query 139407 CCACTATACTAACGAGGA 139424 |||||||||||||||||| Sbjct 1283176 CCACTATACTAACGAGGA 1283193 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 1283193 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 1283134 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1283133 CCCGACGGGGAG 1283122 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 3337095 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3337154 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3337155 TACTAACGAGGA 3337166 >seq71208 Length=22231620 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 88866 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 88925 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 88926 CCCCGACGGGGAG 88938 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 88867 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 88926 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 88927 CCCGACGGGGAGG 88939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||| |||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 137800 TCCTCGTTAGTATAATGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 137741 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 137740 CCCGACGGGGAG 137729 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 88938 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 88879 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 88878 TACTAACGAGGA 88867 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| || Sbjct 137729 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCATTA 137788 Query 139413 TACTAACGAGGATTT 139427 ||||||||||||||| Sbjct 137789 TACTAACGAGGATTT 137803 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||| |||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 137800 TCCTCGTTAGTATAATGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 137741 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 137740 CCCGACGGGGAG 137729 >seq72916 Length=12258079 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7807304 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7807363 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7807364 CCCGACGGGGAG 7807375 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 7810526 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 7810585 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 7810586 CCCCGACGGGGAGG 7810599 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7810527 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7810586 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 7810587 CCCGACGGGGAG 7810598 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 7807303 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 7807362 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 7807363 CCCCGACGGGGAG 7807375 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7807375 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7807316 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7807315 TACTAACGAGGA 7807304 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7810598 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7810539 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7810538 TACTAACGAGGA 7810527 >seq71690 Length=4954300 Score = 86.0 bits (94), Expect = 8e-12 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 11726 CCAG-TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||| ||||||||||||| ||||| ||| ||||| ||| |||||||||||||| Sbjct 2614146 CCAGCTCCTCATTAGTATAGTGGTGAGTATCCCCACCTGTCACACAGGAGACCGGGGTTC 2614205 Query 11784 GATTCCCCGACGAGGAGGGAGGTTA 11808 ||||||||| | ||| ||||||| Sbjct 2614206 AATTCCCCGATGGGGA--GAGGTTA 2614228 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||| ||||||||||||| ||||| ||| ||||| ||| |||||||||||||| |||| Sbjct 2614151 TCCTCATTAGTATAGTGGTGAGTATCCCCACCTGTCACACAGGAGACCGGGGTTCAATTC 2614210 Query 8718 CCCGACGAGGAG 8729 ||||| | |||| Sbjct 2614211 CCCGATGGGGAG 2614222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652234961351200