Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq72916 145 7e-30 seq71171 129 6e-25 seq70448 129 6e-25 >seq72916 Length=12258079 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 7817632 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCC 7817573 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||||||||| |||||||| |||||| ||| Sbjct 7817572 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 7817513 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||| ||||| |||| ||||| ||| ||||| || || || Sbjct 7817512 GACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 7817453 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 7817452 CTTCACGAAGATCTGCAT 7817435 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| ||| || ||| | || || ||||| Sbjct 7817866 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTG 7817807 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| ||||||||||| |||||||| |||||| Sbjct 7817806 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTT 7817747 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||| | ||||| |||| ||||| |||| ||||| ||| ||||| || Sbjct 7817746 GGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGT 7817687 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 7817686 GAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| | || || ||||||||||| Sbjct 7817404 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTGCTTGCC 7817345 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||||||||| |||||||| |||||| ||| Sbjct 7817344 AGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 7817285 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||| ||||| |||| ||||| ||| ||||| || || || Sbjct 7817284 GACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 7817225 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 7817224 CTTCACGAAGATCTGCAT 7817207 >seq71171 Length=10874107 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| || | ||| | | | || || ||||||||||| Sbjct 9049392 GTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCA-TCGTCCAGCTGCTTGCC 9049334 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 9049333 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 9049274 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 9049273 CACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 9049214 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 9049213 CTTCACAAAGATCTGCAT 9049196 >seq70448 Length=578665 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| |||||||| || | ||| | | | || || ||||||||||| Sbjct 511414 GTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCC 511356 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 511355 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 511296 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 511295 CACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 511236 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 511235 CTTCACAAAGATCTGCAT 511218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482969224545200