Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq69793 235 6e-57 seq72886 127 2e-24 seq71536 127 2e-24 seq72419 87.8 2e-12 >seq69793 Length=3061426 Score = 235 bits (260), Expect = 6e-57 Identities = 620/938 (66%), Gaps = 29/938 (3%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || |||||||||| || || | ||| ||| Sbjct 8625 CCAGGGCTTTATGCCTCAGATGCTCATCCAGACACTGGATGGCAAAGAAGTCGACATCCA 8684 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 |||| ||||| || ||||| | ||| || || ||| ||||| | ||| || | Sbjct 8685 CATCAAACTTATTGGCGAAAAAGTGGTGT---TTGCCCAACATCCAGGCCAAATCACCAG 8741 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| ||||| ||||| |||||||| |||||| ||| || ||||| | || || | Sbjct 8742 CTCCAAACACACACACACTGCGCACGTGGACGCCGTCGCAGGGTGGATAGGGTGCGCCCT 8801 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || ||||| || || ||||||||||||| || ||||| | | || ||||| ||| | Sbjct 8802 TGTTAACATCACCTTCAAAGTATTGCCACTTGACAAACCTGGCAACAGACTGCAAGTCAG 8861 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||||||||||| | |||| | || || | | || | || || | | Sbjct 8862 AAAGGTCGTACTTGTAGCTCAAGGGCAGAGAGCCTGGGGCCTCGGGGATCCTTTGGATGG 8921 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCC---- 162414 | ||||| |||| || || || || ||||| || | || |||||||||||||| | Sbjct 8922 TGGCCCAGAGGTACTCATCCGGGCTGTACGTGTCGTGCGCCCACTCCATGAACTTCTGCA 8981 Query 162415 -CTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGC 162473 | |||||| | ||| | || ||| | | ||| |||| | ||| ||||| Sbjct 8982 TGTCTCCGTTT-----TCTAGCACATAGCCCACGAATGCCCTACTCACTACAAAATACGC 9036 Query 162474 GCTACC--AGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTG 162531 || || |||||| | | || | | | |||||| | ||||| | ||||||| Sbjct 9037 ACTGCCTGAGAAAAGAGGTGTTTTC--AGAGGAGGCTGTGCTTTGGGGTTCCCCGTGTCC 9094 Query 162532 ACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGAC 162591 | ||| ||| || ||||| | | ||| ||||||| | ||| || ||| Sbjct 9095 ATCACCCGTCCATCGACGACTGCATAATGCTTTTTCCACCT-TTCTGCTTTATG--AGAT 9151 Query 162592 GG---GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATC 162648 || | || || || || |||| ||| || | ||| |||| | || || Sbjct 9152 GGCATTTTCTCCGTTTCCAGGTTGTTTTCGCCCATGAACGACTTGAGCTTCCTGACAATT 9211 Query 162649 TCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTA 162708 || || || || |||| |||||| || |||| || ||||| || | || ||||| | Sbjct 9212 TCCAGGTTAGTTTTAACGGGAAAATCCATGCCACAAAGATTGATCAAGTACTTCCAGTCT 9271 Query 162709 ACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGAC 162768 || | ||| || |||| | ||||| || |||||||| || |||||||| || Sbjct 9272 GTGCCCCTACTGTAGAGGTCCTTCATGCAGTTGAGGTCGGCCTGCACCCGACTCCATGAT 9331 Query 162769 GCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATC 162828 || || || |||||||||| | | |||| ||||||||||| ||||||| || | || Sbjct 9332 GCATAGACCACGCTCTCCAGCTGACTGGCCACAAAGACATTCCCGAAACAGGACGCAATG 9391 Query 162829 CCCATCACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTAT 162885 ||| |||| | ||| | || | | |||| | ||| || || || || | ||||| Sbjct 9392 CCCTTCACTG-CAGCTATAAAA--GAGTCCTCTGATTTTCTGTCCACATGGATACAGTAG 9448 Query 162886 AGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGT 162945 | ||||||||| || |||||||| || | || || | ||| || || || || || Sbjct 9449 AAATTCTGAGGCATATAAATGGCCCTTAGGAGCCTGTCAAGCATTTCAATTTTGTGATGA 9508 Query 162946 ACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || ||||| || || ||||| | ||||||| Sbjct 9509 ACCACTATGGAATAGGCAATTGGGAAGCCTTCCTCCTC 9546 >seq72886 Length=1232623 Score = 127 bits (140), Expect = 2e-24 Identities = 401/608 (66%), Gaps = 19/608 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || |||| | | Sbjct 683705 TCCAGTTAAAGTAACTAAGGTACAACTTATTGTTTTTGTCAACTTCCTTTAGGTACCTTG 683646 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| ||||| || | || | || | |||| Sbjct 683645 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATAAATGAATCAGCTGGAATATAAT 683586 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| | || Sbjct 683585 TCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAAGAAAGCAT 683526 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | ||||| ||||| | |||||| |||| Sbjct 683525 TATAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGATAAAATT 683466 Query 177127 TACAGG--AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | |||| ||| || || |||| | ||| | ||| ||||| | | | | Sbjct 683465 TACAAGTAGAGATGGTA--GGAATCAAGTTCTTATCATTCACATACTCTCCGAATGCTTG 683408 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || ||||| ||| || || || || | | Sbjct 683407 CCCATAGGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 683349 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| || || Sbjct 683348 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 683294 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || |||| || | | || | || | | ||||| ||||| || ||||| | Sbjct 683293 TTCAAACACAAATG-GGTTTGTGCTTACTGTCAAGAAGCCATAAGGCACTTGGATATCTG 683235 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 |||| || | ||| |||| || || ||||| |||| || || | || |||| ||| Sbjct 683234 AGTCACGGCGGTAAGTTAGAGTCAGGTTGAACAGGTGCTCAATTCCACTCTTTTG--GGG 683177 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | || |||||||| |||||||| ||||| ||||| |||| || || | || Sbjct 683176 AGTATGAGTTGGTGATTCTAAATTCATCCAAATCCATTTTTGGAAGGGCGGCCTAGCTTG 683117 Query 177479 CGTAGGTA 177486 | ||||| Sbjct 683116 CTGAGGTA 683109 >seq71536 Length=14703830 Score = 127 bits (140), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 171521 GTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTA 171580 || ||||| |||||||| | ||| ||| ||||||| | | || || ||||| || Sbjct 9336248 GTCACAGTTCCCAAGTGCAGGACCAGGCAGGTCACCTCAT---TCCCAACCTGACTCTTG 9336304 Query 171581 GGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTT 171640 | |||||| || | || |||||||| |||||||| ||||| |||||||| | ||| | Sbjct 9336305 GCATCTTTGACCCGGAGGATGCTAGTGACAGATGTGGTCCCATTACGATGCAAAACACTC 9336364 Query 171641 TTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTA 171700 | ||||||||| || || || || || || ||||| | || | ||| ||||| | Sbjct 9336365 TCAGTACTATTCTCAATCCCTGACCCACTGACCTTCCAGGAGATGAAAGGTGCTGGGCGG 9336424 Query 171701 GCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 ||||| ||||||||||| ||||||| | ||||| ||| Sbjct 9336425 GCAGTGGCAGAGCAAGTGATGTTTAGTTGGTCTTCAAAG 9336463 >seq72419 Length=7657083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 225/339 (66%), Gaps = 8/339 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| ||||||||| | ||||||||||| || ||| ||| | | ||| Sbjct 5007818 CGGACCATCTCAGCATTGGTCTTTATAGGAAAGTCGGTCCCACAGGTATTCAGCAAGTAT 5007877 Query 162700 TTCCACTTAACGCTGAGTCC--GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 ||||| || ||| | | ||| |||| | ||||||||| ||||| || || | Sbjct 5007878 TTCCAAGGCACC--GAGCTCTGGAACAAGTCCTCCATACAGTTCAGGTCGGCTTGTACCC 5007935 Query 162758 GACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAAC 162817 ||| || ||||| || || ||| | | |||| | |||||||| ||| | Sbjct 5007936 TGGACCAGGAGGCGTAAACTACTGGAACCAGCTTGCTGGCTATGAAGACATTTGGGAAGC 5007995 Query 162818 ACGAAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTG 162875 | ||| | ||| || | || ||| | ||| | | || | ||| || ||||| Sbjct 5007996 ATGAAGCGATCGCCCTGACTGCCTCTTTGAATGTTTCTGGA--GACTTCTGGTCCACGTG 5008053 Query 162876 TACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTAT 162935 || ||||||| ||||||||||||||| | || | || | |||||||| | || || Sbjct 5008054 GACACAGTATATATTCTGAGGGGCGTACACAGCTCGAAGCAGCCTCTCGAAGTTTTCAAT 5008113 Query 162936 CTTATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 || | || ||||| || || || || || ||||| || Sbjct 5008114 TTTCTCATGAACCACCATGGAGTATGCAATAGGGAAGTC 5008152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577891672208000