Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq70448 91.5 3e-13 seq71171 86.0 1e-11 >seq70448 Length=578665 Score = 91.5 bits (100), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||||||||||||||||||||| | ||| ||||||| | ||| | ||||||||| Sbjct 511426 ACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 511367 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 511366 AGCTGCTTGCCTGCAAAGATGAGCC 511342 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| ||||| Sbjct 511215 AAAATG---CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 511271 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| || | || || ||| ||||| || || |||||||| || || Sbjct 511272 CCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 511331 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| || || |||||| |||||||||| | ||| | | || Sbjct 511332 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 511391 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| | ||||||||||||||||||||||| || Sbjct 511392 TACAATATTCAGAAAGAGTCTACTCTTCACCTGGT 511426 >seq71171 Length=10874107 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||||||||||||||||||||| | ||| ||||||| | ||| | ||||| ||| Sbjct 9049404 ACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCC 9049345 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 9049344 AGCTGCTTGCCTGCAAAGATGAGCC 9049320 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| ||||| Sbjct 9049193 AAAATG---CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 9049249 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||| || | || || ||| ||||| || || |||||||| || || Sbjct 9049250 CCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 9049309 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| || || |||||| |||| ||||| | ||| | | || Sbjct 9049310 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTCCTGAC 9049369 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| | ||||||||||||||||||||||| || Sbjct 9049370 TACAATATTCAGAAAGAGTCTACTCTTCACCTGGT 9049404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180689232436330