Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq70448 84.2 2e-11 seq72823 82.4 7e-11 >seq70448 Length=578665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||| |||||||| | || || |||||| ||||| || || | | Sbjct 511411 GACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 511352 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 511351 AAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 511292 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | |||||||| || | || | || || |||||||| || || Sbjct 511291 TTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 511232 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 511231 ACAAAGATCTGCAT 511218 >seq72823 Length=4236179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || |||| || || || ||| Sbjct 500816 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTCCCCAGGTTCTGTTGGTTG 500875 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | |||||| |||||||||| || ||| ||||| Sbjct 500876 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTC 500925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476165985562800