Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq72916 98.7 3e-17 seq71956 98.7 3e-17 seq69870 98.7 3e-17 seq71742 93.3 1e-15 seq71208 82.4 2e-12 >seq72916 Length=12258079 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7809947 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7810006 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7810007 CCGGGTTTCGGC 7810018 >seq71956 Length=2248420 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 527123 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 527064 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 527063 CCGGGTTTCGGC 527052 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||| Sbjct 450058 TAGCTCAGTTGGGAGATCGTTAGACTGAAGATCTTAAGGTCCCTGGTTCAATCCCGGGTC 450117 Query 2836 TCAGC 2840 ||||| Sbjct 450118 TCAGC 450122 >seq69870 Length=8694623 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5953789 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5953730 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5953729 CCGGGTTTCGGC 5953718 >seq71742 Length=2896297 Score = 93.3 bits (102), Expect = 1e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||| |||||||||||||| | | Sbjct 2052128 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCGATC 2052187 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 2052188 CCGGGTTTC 2052196 >seq71208 Length=22231620 Score = 82.4 bits (90), Expect = 2e-12 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| |||||||||||||||||| ||||||||||||||||||| || ||| || | Sbjct 62629 GGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGACCCGTGGCTCGAT 62570 Query 2828 CCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 62569 CCTGGGTTTCGGC 62557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15836645180850