Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq72916 125 6e-24 seq71171 105 6e-18 seq70448 102 7e-17 >seq72916 Length=12258079 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || ||| |||| ||||||||||| || ||||| Sbjct 7817626 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 7817567 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 7817566 GATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 7817507 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||| | ||||| || || || || | || ||||| Sbjct 7817506 CTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 7817447 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 7817446 GAAGATCTGCAT 7817435 Score = 123 bits (136), Expect = 2e-23 Identities = 148/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || ||| | || ||||||||||| || ||||| Sbjct 7817398 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 7817339 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 7817338 GATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 7817279 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||| | ||||| || || || || | || ||||| Sbjct 7817278 CTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 7817219 Query 35725 AAATATCTGCAT--TCTGTG 35742 || |||||||| |||||| Sbjct 7817218 GAAGATCTGCATTGTCTGTG 7817199 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| || |||||||| |||| || || ||| | || || Sbjct 7817872 CACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCTTC 7817813 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| |||| || ||||||||| | ||| | || ||||||||| Sbjct 7817812 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCTTG 7817753 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | ||||| || | ||||||||| | ||||| || || Sbjct 7817752 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTCTT 7817693 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || ||||| || |||||||| Sbjct 7817692 GCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 >seq71171 Length=10874107 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||| ||||| || | | || || | |||||||||||||| || ||||| Sbjct 9049387 CTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCCAGCTGCTTGCCTGCAAA 9049328 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 9049327 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 9049268 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 9049267 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 9049208 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 9049207 AAAGATCTGCATTTTG 9049192 >seq70448 Length=578665 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||| ||||| || | | || || | || ||||||||||| || ||||| Sbjct 511409 CTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 511350 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 511349 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 511290 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 511289 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 511230 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 511229 AAAGATCTGCATTTTG 511214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450372502428400