Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq71882 136 6e-27 seq72798 89.7 7e-13 >seq71882 Length=3594170 Score = 136 bits (150), Expect = 6e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 214001 ATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTTACGAA 214060 |||||||| || | |||||||| | ||||| || ||| ||||| ||| | ||| | Sbjct 2485700 ATTGACGGAGAGATGTACCCTCCGTCAGTCAAAGACACCCAGGTGCAGATGATCTACCCA 2485759 Query 214061 CCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCC 214120 ||| | || || | | || ||||| |||| | ||| | || || || |||||| Sbjct 2485760 CCCCACACCCCTGAGCACCTGCGCTTCGCGGTGGGCCAGGAGGTCTTCGGCCTGGTGCCC 2485819 Query 214121 GGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTG 214180 ||| | ||| ||||||||| ||||||||| | |||||||||||||| ||||| ||||| Sbjct 2485820 GGTCTGATGATGTACGCCACCATCTGGCTGCGGGAGCACAACAGGGTGTGCGATGTGCTC 2485879 Query 214181 AAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 | || ||||| ||||| ||| | ||||| | |||||||||| Sbjct 2485880 AGACGGGAGCATCCGGAGTGGGATGACGAGCGCCTGTTCCAGA 2485922 >seq72798 Length=3738091 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| ||||||| || |||| || ||||| | ||||||| |||||||| Sbjct 3628701 TGGGCCAAGAGGTGTTTGGGCTGCTGCCGGGGCTCATGCTCTACGCCACACTCTGGCTGC 3628760 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || || ||| ||||||| |||||| || ||| | ||||||| Sbjct 3628761 GTGAGCACAACCGTGTGTGTGACCTGCTGAAGGCAGAGCATCCCACCTGGGAAGACGAAC 3628820 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| || |||| ||| || Sbjct 3628821 AGCTCTTTCAGACCACCCG 3628839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722665109275200