Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq71464 120 4e-22 seq72823 109 8e-19 seq71723 98.7 1e-15 >seq71464 Length=6720225 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | |||||| ||||| || || |||||||| || || || || | Sbjct 4556652 CCTCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCT 4556711 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || |||| |||||||| || ||||||||||| ||||| || || ||||| | Sbjct 4556712 TGAGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGG 4556771 Query 39759 CAACAAGTCTCTCTCC 39774 | || | | |||||| Sbjct 4556772 CGACCACACGCTCTCC 4556787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 ||||||||||| |||| |||| |||| ||| ||| | ||||| |||||||| Sbjct 4555463 TTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTAGGACTGGACATGACTCCCATCC 4555522 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || || || || ||||||| || ||||| | Sbjct 4555523 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAATATTCT 4555582 Query 39387 CCATGAAATCAAACGGATT 39405 ||||||| ||||||||||| Sbjct 4555583 CCATGAAGTCAAACGGATT 4555601 >seq72823 Length=4236179 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || || |||||||| ||||| | || Sbjct 488520 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 488579 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 488580 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 488639 Query 68839 TTTCTAAGACCAT 68851 ||| | | ||||| Sbjct 488640 TTTTTTATACCAT 488652 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || ||||| |||| | | Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| |||||||| | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 502288 TCCAGGTAAATAGC 502301 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| || ||||| ||||| || || || | || || || ||||| | Sbjct 521719 CACCACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGACACAGCAATCCTTGCTGCCA 521778 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 || ||||||||||| || | ||||| | || || ||| |||| ||||| || |||| Sbjct 521779 AGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTAT 521838 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | || || ||||| | || | || || || |||||||||| Sbjct 521839 CCAGTTCCACTGTGGTGACTCCACTGTACAAGCCCTGGATTACTTTCATGG 521889 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | || | |||| ||||| || || || | Sbjct 492523 GAGCCCTCATAGGTTTCATATGGGCCATACTCCTTGGCTAAATCACAGCTGGCTTCCAGG 492582 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| || || || || | ||| || | || || ||| |||| || Sbjct 492583 GCTCCATAATAAATAGTCTCAAAGATTTGCTTGTTCAATAACTGGGCCTCTGGACTCTCA 492642 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||| |||||||||| || ||||||||||| || || || Sbjct 492643 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGAACCCCAATTCCAATGGGG 492702 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 492703 CGATGGCGTTTATTTGA 492719 >seq71723 Length=19027027 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/240 (70%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 37395 TTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 37454 ||| ||||| | | || || ||||| || |||| | | || ||||| || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 37455 GCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCC 37514 || | |||| || ||| || ||| ||| ||| | ||| | || |||| ||| || Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 37515 CCTATAATCTTCATCGATTACTCCGCCTCCTACATCAAT-ACCTTTTAG--AGACAAACC 37571 |||||||||||||| || ||||| |||| ||||| || | | || | || ||| || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCC 472109 Query 37572 CGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTT 37631 || | ||||||| ||||||||| || ||| | || ||| |||| || ||||| Sbjct 472110 AGAACGCGGAGCTACTCTTCCATAGCATCCAGAGGGAAGAGCGATCTGAATGTCCGTTTT 472169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686267141317200