Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq70448 89.7 4e-13 seq71171 86.0 5e-12 >seq70448 Length=578665 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| |||||||||||||| | |||| | ||||| ||||| || || Sbjct 511414 GTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 511355 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | || |||||||| ||||||| ||| Sbjct 511354 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 511295 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || ||| || || || || || || | ||||| ||||| || Sbjct 511294 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 511235 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 511234 TTCACAAAGATCTGCAT 511218 >seq71171 Length=10874107 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| |||||||||||||| | |||| | || || ||||| || || Sbjct 9049392 GTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCGTCCAGCTGCTTGCCT 9049333 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| || || || || | || |||||||| ||||||| ||| Sbjct 9049332 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 9049273 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || ||| || || || || || || | ||||| ||||| || Sbjct 9049272 ACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 9049213 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 9049212 TTCACAAAGATCTGCAT 9049196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424547381699760