Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq72823 86.0 7e-12 seq74017 84.2 3e-11 >seq72823 Length=4236179 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || ||||| || || ||||||||||| |||||||| ||||||| | |||| Sbjct 500936 AGTCTCAGACAGAGACAGGCACCCCATACATGCTCTACAAAGATTCCTGTAATCGGAAGA 500877 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || ||| |||| |||| ||||| | ||| || || |||||||| | || | Sbjct 500876 GCAACCAACAGAACCTGGGGACAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGT 500817 Query 105024 TTACAGACAAAGATGAG 105040 ||| |||||||||| Sbjct 500816 ATACCAGCAAAGATGAG 500800 >seq74017 Length=2439271 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || |||||| ||| || || | |||||||| || |||||| ||| || | ||||| Sbjct 43769 GCCTTTGCGGCTGTGGAAGGCGTGTTCTTCTCGGGGTCCTTCGCCGCCATCTTCTGGCTG 43710 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| | || |||||||| || ||| ||||||||||||||| ||| | |||||| Sbjct 43709 AAGAAGAGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 43650 Query 94936 G 94936 | Sbjct 43649 G 43649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582715961505200