Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq71050 100 3e-16 seq72329 95.1 1e-14 seq71464 93.3 5e-14 >seq71050 Length=9744432 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 34489 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 34430 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | |||| |||||||||||| || ||| |||||||| || ||||||||||||| Sbjct 34429 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAGTTGA 34372 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 34489 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 34430 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||||| | |||||| || || ||| ||||| |||||||||||||| || Sbjct 34429 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAGTT 34374 >seq72329 Length=4159870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||| ||||| ||||||||| |||||| || || || || Sbjct 3194089 GTGAAAATATAACGAGGGCTTGCGGCATCTTTGCCACCATGAAGACGAGTTCCAAACTGA 3194148 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 3194149 CCAATGGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 3194208 Query 117425 ATCGT 117429 || || Sbjct 3194209 ATAGT 3194213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| || || ||||||||||| Sbjct 3194089 GTGAAAATATAACGAGGGCTTGCGGCATCTTTGCCACCATGAAGACGAGTTCCAAACTGA 3194148 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 3194149 CCAATGGGCTGAAGCAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 3194208 Query 152149 ATCGT 152153 || || Sbjct 3194209 ATAGT 3194213 >seq71464 Length=6720225 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||| || ||||| | |||||||||||| ||||| || ||||| Sbjct 4556654 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 4556713 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || |||| | || || ||||| |||||||| ||||| || ||||||||| Sbjct 4556714 AGCCAGAAAATGGACGCA-AAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGGC 4556772 Query 74891 GAC 74893 ||| Sbjct 4556773 GAC 4556775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546704831854000