Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq72916 145 9e-30 seq71311 89.7 6e-13 seq71050 87.8 2e-12 seq73152 84.2 2e-11 >seq72916 Length=12258079 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||| || | | Sbjct 7817206 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAG 7817265 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || || ||||||||||| || ||||| ||||| Sbjct 7817266 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCA 7817325 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 7817326 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAA 7817385 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | ||||| | ||||| Sbjct 7817386 CATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGTCTGAGAGGTGG 7817433 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| || | || Sbjct 7817663 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGT 7817722 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 7817723 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 7817782 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 7817783 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCCGACTACAAC 7817842 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| || | ||||| Sbjct 7817843 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTCCGTCT 7817880 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| || | || Sbjct 7817435 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGT 7817494 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 7817495 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCTGACCAG 7817554 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || || || | ||||| || Sbjct 7817555 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCCGACTACAAC 7817614 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || | ||||| | ||||| Sbjct 7817615 ATCCAGAAGGAGTCCACCCTGCACCTCGTGCTCCGTCTGAGAGGTGG 7817661 >seq71311 Length=7776501 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAGGTGATAGCAT 27473 ||||| || || ||| | | ||||| || | || ||||||| || | |||| || Sbjct 2853630 TTTGTAAAAACCCTTGCAAGGAAGACCATCATGCTCAAGGTTGAACTCTTG-GATACTAT 2853688 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | |||| | ||| | || || |||| ||||| ||||||||||| || ||||| | || Sbjct 2853689 AGAAAATGTAAAGACCAAGATCTAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCT 2853748 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||||||| | || |||| ||| | | | || | | | | ||||| Sbjct 2853749 GATATTTGCTGGTAAGCAAGTGGAAGATGGACGTGCTTTGTCTGATGACAGTATTCAAAA 2853808 Query 27594 GGAATCCACTCTTCATCT 27611 | | ||||| |||||||| Sbjct 2853809 GAAGTCCACCCTTCATCT 2853826 >seq71050 Length=9744432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| ||||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 34365 ACCATCATCAACTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 34424 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 34425 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 34484 Query 32245 TTCACC 32250 |||||| Sbjct 34485 TTCACC 34490 >seq73152 Length=1214336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | || Sbjct 587678 ATGCAGATCTTCGTGAAGACTCTGACAGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 587737 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 587738 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 587781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569777658797600