Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq69793 95.1 2e-14 seq72419 86.0 8e-12 >seq69793 Length=3061426 Score = 95.1 bits (104), Expect = 2e-14 Identities = 492/778 (63%), Gaps = 14/778 (2%) Strand=Plus/Minus Query 13696 TTCCCA-TCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 |||||| | ||||| || || ||| | || ||||| || || ||| | || | ||||| Sbjct 9534 TTCCCAATTGCCTATTCCATAGTGGTTCATCACAAAATTGAAATGCTTGACAGGCTCCTA 9475 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGAC 13814 |||||||| || || ||||| ||||||| |||| |||||| || || | ||| Sbjct 9474 AGGGCCATTTATATGCCTCAGAATTTCTACTGTATCCATGTGGACAGAAAATCAGAGGAC 9415 Query 13815 GAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCAC 13874 || || | || || ||| || || ||| || || ||||| Sbjct 9414 TCTTTTATAGCTGCAGTGAAGGGCATTGCGTCCTGTTTCGGGAATGTCTTTGTGGCCAGT 9355 Query 13875 CGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATG 13934 | |||| | |||||| || | || |||||||| |||||||||||||||| ||||||| Sbjct 9354 CAGCTGGAGAGCGTGGTCTATGCATCATGGAGTCGGGTGCAGGCCGACCTCAACTGCATG 9295 Query 13935 TCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGAC 13994 |||||| || | | |||| |||| || |||| || || || ||||| Sbjct 9294 AAGGACCTCTACAGTAGGGGCACAGACTGGAAGTACTTGATCAATCTTTGTGGCATGGAT 9235 Query 13995 TTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGC---CCTGGGCGGCAAG 14051 || || | || || |||||||| || || || ||| ||| | | |||||| || Sbjct 9234 TTTCCCGTTAAAACTAACCTGGAAATTGTCAGGAAGCTCAAGTCGTTCATGGGCGAAAAC 9175 Query 14052 AACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA-GCTGCACCGCATCAGGAAGAGGCA 14110 ||| ||||| | ||| ||||| || || || | | | |||| | ||| Sbjct 9174 AAC---CTGGAAACGGAGAAAATGCCATCTCATAAAGCAGAAAGGT----GGAAAAAGCA 9122 Query 14111 CGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCT 14170 | | | || || |||| | |||| || | ||| || | ||| || || Sbjct 9121 TTATGCAGTCGTCGATGGACGGGTGATGGACACGGGGAACCCCAAAGCACAGCCTCCTCT 9062 Query 14171 CAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTT 14230 | | || | || | || | || || |||| || | ||| ||||||| || Sbjct 9061 GAAAACACCTCTTTTCTCAGGCAGTGCGTATTTTGTAGTGAGTAGGGCATTCGTGGGCTA 9002 Query 14231 CGTCCTCAAGGACG-AGCCGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCC 14289 || || | ||| || | || | ||||| | ||| | ||||||||||||| Sbjct 9001 TGTGCTAGAAAACGGAGACA-TGCAGAAGTTCATGGAGTGGGCGCACGACACGTACAGCC 8943 Query 14290 CCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCG 14349 | || ||| |||| ||||||||| | || || || || | | || || | ||| Sbjct 8942 CGGATGAGTACCTCTGGGCCACCATCCAAAGGATCCCCGAGGCCCCAGGCTCTCTGCCCT 8883 Query 14350 TTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACT 14409 | | |||||||||| || ||| || | | | |||||| ||||||||||| | Sbjct 8882 TGAGCTACAAGTACGACCTTTCTGACTTGCAGTCTGTTGCCAGGTTTGTCAAGTGGCAAT 8823 Query 14410 ACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGT 14467 ||| || || ||| | || || || || | || || || ||||||||| ||||||| Sbjct 8822 ACTTTGAAGGTGATGTTAACAAGGGCGCACCCTATCCACCCTGCGACGGCGTCCACGT 8765 >seq72419 Length=7657083 Score = 86.0 bits (94), Expect = 8e-12 Identities = 239/365 (65%), Gaps = 4/365 (1%) Strand=Plus/Minus Query 13674 CTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATC 13733 |||||| |||||| |||| || || || || ||||| || ||| | || | || || Sbjct 5008170 CTGAGCAGAGAAGAGTTCGACTTCCCTATTGCATACTCCATGGTGGTTCATGAGAAAATT 5008111 Query 13734 GAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCAC 13793 || | |||||| | || || | || | |||||||| ||||| | ||||| |||||| Sbjct 5008110 GAAAACTTCGAGAGGCTGCTTCGAGCTGTGTACGCCCCTCAGAATATATACTGTGTCCAC 5008051 Query 13794 GTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTC 13853 |||||| ||||| || |||| || ||| ||| ||||| |||||| Sbjct 5008050 GTGGACCAGAAGTCTCCAGAAACATTCAAAGAGGCAGTCAGGGCGATCGCTTCATGCTTC 5007991 Query 13854 CCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTG 13913 || || || | | ||| | |||| || || |||| ||||||| | || Sbjct 5007990 CCAAATGTCTTCATAGCCAGCAAGCTGGTTCCAGTAGTTTACGCCTCCTGGTCCAGGGTA 5007931 Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973 || |||||||| | ||| ||| |||| || | | | || |||| ||| || Sbjct 5007930 CAAGCCGACCTGAACTGTATGGAGGACTTGTTCCAGAGCTCGGTGCCTTGGAAATACTTG 5007871 Query 13974 CTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031 || | |||||| |||| ||||| || | |||||||| ||||| || ||||| | Sbjct 5007870 CTGAATACCTGT--GGGACCGACTTTCCTATAAAGACCAATGCTGAGATGGTCCGGGCCC 5007813 Query 14032 TGAAG 14036 ||||| Sbjct 5007812 TGAAG 5007808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658123855244800