Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq70384 237 1e-57 seq72168 129 5e-25 seq73533 105 5e-18 seq70139 91.5 1e-13 >seq70384 Length=4945429 Score = 237 bits (262), Expect = 1e-57 Identities = 403/576 (70%), Gaps = 10/576 (2%) Strand=Plus/Minus Query 29890 ATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGT 29949 || |||||| | || || |||||| | || || || || || | | || || || Sbjct 1456057 ATTCAGGTAAATATGTGCATCTCCCCAAATATGTACGAAGTCACCTGTCTGCAGGCCAGT 1455998 Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 || | |||| | ||||| ||||| || | ||||||| || || ||||| | || | Sbjct 1455997 GATGGGAGCGACTATGTAGGTGAGCAGGGTATAGCTGGAGACTTTGAAGGGCAGGCCCTG 1455938 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 |||||||| | || |||||| ||| | || | ||||| | || |||||| || Sbjct 1455937 GTCCATGTCCACAGAGAGCTGGTACAGCGGGCAGTACAGCTCCCAGTTCACCACGTAGAA 1455878 Query 30070 CTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 ||| | | ||||||||| ||||| || ||||| || | ||||| |||||||||| Sbjct 1455877 CTGGTAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGCTCTTTCGGGTTCCAGGT 1455818 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 30189 ||||| ||||| | |||||| || |||||| | ||||| || | | || ||||| Sbjct 1455817 GCACATGATGAGTCTCCTGTCGTCAGGGTTGGTTTTGATGGTGTTGATCACCTTCTGCAG 1455758 Query 30190 CTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATG 30249 ||| |||| || |||||||| |||| | ||| | |||| || || | ||||| Sbjct 1455757 CTGGTCCATTCCTTGACCCGAGTAATCTGACTCGATGCCTTTGTAGTCAGCCCTGAAATA 1455698 Query 30250 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG--AAGCCC 30307 |||||||||||| || || || || |||||||| || || | || ||| | || ||| Sbjct 1455697 CCTCCACTGGAAGCCATAAACGGGGCCCAGGTCCCCTTCCT-GATG-GCTGGAAAACCCC 1455640 Query 30308 CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAG-A 30366 ||| || ||||||| || | | |||| ||||||||||| | ||||| || | Sbjct 1455639 AGGCTGTTCAGGAAGTCTC-AGACCTGCTGGCATCCCAGATCTTCATGCCCTT---AGAA 1455584 Query 30367 GAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTT 30426 ||| ||||||| ||||| | || ||| ||||||||||||||||||| || |||| Sbjct 1455583 GAGTTCTTTGG-CATTGTGCATCCCTTGATAAACCACAGCAGCTCCTCCAAAACACCCTT 1455525 Query 30427 CCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30462 ||| || || | ||||||| | || |||||||| || Sbjct 1455524 CCAGAACACACACTTGGTCATCAGCAGGGGAAATTG 1455489 >seq72168 Length=9498425 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| |||||| | |||||| || || || | ||||||||||||||| ||||| Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||| || | |||||| ||||| || || ||||| |||| | Sbjct 6792562 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 6792621 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || || || || | ||||||||| ||||| || ||||| || Sbjct 6792622 ACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAG 6792665 Score = 125 bits (138), Expect = 6e-24 Identities = 131/170 (77%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || || ||||||||||| Sbjct 6796797 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTC 6796856 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 30340 || || | | | || ||| ||| ||||||| ||||||| ||| |||||||| Sbjct 6796857 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCA 6796914 Query 30341 TCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||||| || ||||| ||| || ||||||| |||||||||||| Sbjct 6796915 TCCCAGATCTTCACACCCTTGGAAGACAGTTCTTTGGCGTTTGTGGACCC 6796964 >seq73533 Length=2840070 Score = 105 bits (116), Expect = 5e-18 Identities = 174/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| |||||| |||||||| |||||| | ||| | || ||| || | ||||| || Sbjct 2091692 CTTTCAGGTTCC-GGCGCACATGATGATTCTTCTGCCGTCAGGGCTGGTTTTGATGGTGT 2091634 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGT 30233 | | | || |||||||| ||||| || |||||||| |||| ||| | ||| Sbjct 2091633 CGATCACTTTCTGCAGCTGGTCCACTCCTTGACCCGAGTAATCTGAGTCCATACCTTTGT 2091574 Query 30234 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCC 30293 | || || || ||| |||||||||||| || || || || | |||||| || || | | Sbjct 2091573 AGTCAGCCCCAAAAAACCTCCACTGGAAGCCATAAACGGGGCACAGGTCCCCTTCCTGGC 2091514 Query 30294 TGTGCTCG--AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT 30351 ||| | || ||| ||||||| |||||| ||| ||||||| | ||||||||| Sbjct 2091513 --GGCTGGGAAACCCCAGGCTGTCCAAGAAGTCTTGGGACCCGTTGGTATTCCAGATCTT 2091456 Query 30352 TACCCCCT 30359 || |||| Sbjct 2091455 CACGCCCT 2091448 >seq70139 Length=1650317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || ||||| || || ||||| ||| ||||| |||||| || ||| Sbjct 1356171 TTGAGTTCTCTACTTAGTACTACATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGG 1356112 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 1356111 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1356064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405940343915160