Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq72916 89.7 3e-13 >seq72916 Length=12258079 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | || || ||| |||||| || ||||| || || || Sbjct 7817661 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817602 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| || || || || ||||| || | | ||| ||||| || || Sbjct 7817601 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817542 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | || ||||| | ||||| Sbjct 7817541 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 7817483 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 7817482 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | ||||| ||| || ||| |||||| || ||||| || || || Sbjct 7817889 CCTCCCCTCAGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817830 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 7817829 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817770 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | || ||||| | ||||| Sbjct 7817769 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 7817711 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 7817710 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||| | || || ||| |||||| || ||||| || || || Sbjct 7817433 CCACCTCTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 7817374 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 7817373 AGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 7817314 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | || ||||| | ||||| Sbjct 7817313 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 7817255 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || || || || || | || ||||| || |||||||| Sbjct 7817254 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314442953132090