Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq70448 98.7 9e-16 seq71820 86.0 5e-12 seq71171 82.4 7e-11 >seq70448 Length=578665 Score = 98.7 bits (108), Expect = 9e-16 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 26972 TTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 |||||||| ||| | || ||||||| ||||| || || ||||| |||||| | || || Sbjct 511200 TTTTAATT-ATAGGTCAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCAC 511258 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 || || ||||| || || | ||||||| || || || || || || ||||| Sbjct 511259 CCTGGAGGTGGAGCCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGA 511318 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || || || ||| | | || | || ||||| || ||||||| | Sbjct 511319 AGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCG 511378 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || |||| || ||||| ||||| || ||||| || | || |||| | ||| || | Sbjct 511379 CACTCTTTCTGACTACAATATTCAGAAAGAGTCTACTCTTCACCTGGTCCTCCGTCTGAG 511438 Query 27209 GGGTGGC 27215 ||||||| Sbjct 511439 GGGTGGC 511445 >seq71820 Length=8892586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAG-TGGAACCGTCC 27047 ||||||| || | || || ||||| |||| | | || || ||| ||| |||| || Sbjct 105898 TGCAGATCTTCATGAAGACCCTGACGGGCA-GACCATCAC-CTTCAAGGTGGAGCCCAGT 105955 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| ||| |||| || ||||| || || || || Sbjct 105956 GACACCATCGAGAACGTCAAAGCCAAAATCCAACACAAGGAGGGCATCCC-CCTGACCAG 106014 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| ||| |||| | | ||||||||||||| || | | ||| | || || |||||| Sbjct 106015 CAGCATTTGATATTTGTCAGCAAACAATTGGAGGATGGCTGGAC--TCTCTGACTACAAC 106072 Query 27168 ATTCAAAAGGAGTC 27181 | ||||| ||||| Sbjct 106073 CTCCAAAAAGAGTC 106086 >seq71171 Length=10874107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 9049196 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 9049255 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || || || || Sbjct 9049256 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 9049315 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || |||| || | || || | || ||||| Sbjct 9049316 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGACGATGGCCGCACTCTTCCTGACTACAAT 9049375 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| || ||||| || | || |||| | | | || |||||||| Sbjct 9049376 ATTCAGAAAGAGTCTACTCTTCACCTGGTCCTTCATCTGAGGGGTGGC 9049423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434512131849600