Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq70384 315 6e-81 seq72168 174 1e-38 seq73533 158 1e-33 >seq70384 Length=4945429 Score = 315 bits (348), Expect = 6e-81 Identities = 560/807 (69%), Gaps = 19/807 (2%) Strand=Plus/Plus Query 34140 GCTACCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCC 34199 ||| ||| |||| ||||| | || || || | || || ||| | ||| |||| | Sbjct 1455413 GCTTCCGCAAGGAGGACCCCAGAGGCACAGGCATGCTGTCGTTGTCCAGCATTCAGGTGC 1455472 Query 34200 GATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCG 34259 |||| ||| | | ||||||| ||||||| ||| || |||||| ||||||||| | Sbjct 1455473 C-TACAGCCTGTGAGATCAATTTCCCCTGCTGATGACCAAGTGTGTGTTCTGGAAGGGTG 1455531 Query 34260 TGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCC 34319 | | ||||||||||||||||| | | ||| ||| || |||| || |||| || Sbjct 1455532 TTTTGGAGGAGCTGCTGTGGTTTATCAAGGGATGCAC-AATGCCAAAGAACTCT--TCTA 1455588 Query 34320 GGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC- 34378 ||| ||||||||||||| || | ||||| ||||||| ||| ||| | |||||| Sbjct 1455589 AGGGCATGAAGATCTGGGATGCCAGCAGGTCT-GAGACTTCCTGAACAGCCTGGGGTTTT 1455647 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | | |||| || ||| ||||||| || || || ||||||||||| | || || Sbjct 1455648 CCAGC-CATCAGGAAGGGGACCTGGGCCCCGTTTATGGCTTCCAGTGGAGGTATTTCAGG 1455706 Query 34439 GCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTAC 34498 || || || || | ||| | || || ||||| || ||| ||||||||||||| | Sbjct 1455707 GCTGACTACAAAGGCATCGAGTCAGATTACTCGGGTCAAGGAATGGACCAGCTGCAGAAG 1455766 Query 34499 GTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAAC 34558 |||||| ||||| | || |||||||| ||||| || || | |||||| | |||||| Sbjct 1455767 GTGATCAACACCATCAAAACCAACCCTGACGACAGGAGACTCATCATGTGCACCTGGAAC 1455826 Query 34559 CCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC 34618 ||||| || ||||||||||||||||| || || |||||| |||||| ||| |||||||| Sbjct 1455827 CCGAAAGAGCTCCCTCTGATGGCGCTGCCTCCCTGCCACGCCCTCTACCAGTTCTACGTG 1455886 Query 34619 GCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTG 34678 | ||| ||||||||| ||||| ||| || || | || | ||||||| || || Sbjct 1455887 GTGAACTGGGAGCTGTACTGCCCGCTGTACCAGCTCTCTGTGGACATGGACCAGGGCCTG 1455946 Query 34679 CCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738 || ||||| | | || || | |||||||| ||||| |||||| || || || Sbjct 1455947 CCCTTCAAAGTCTCCAGCTATACCCTGCTCACCTACATAGTCGCTCCCATCACTGGCCTG 1456006 Query 34739 GTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAG 34798 | || || | || |||| | ||| ||||| ||||| |||||||| | | Sbjct 1456007 CAGACAGGTGACTTCGTACATATTTGGGGAGATGCACATATTTACCTGAATC-------G 1456059 Query 34799 CGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 ||| | ||||| || ||||| || |||| ||| | ||||||||| || || Sbjct 1456060 CGG---AAAACTCAGCTTCAGCGAGAACCAGGACCTTTCTCAACGCTCAAAATCCTTTGA 1456116 Query 34859 GCCGTCACCTCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTACCGGCC 34917 | || | |||| |||||||| | ||| || ||||| | ||||||||| | || Sbjct 1456117 ACAGTTGCGACAATTGATGACTTCA-CAGCTGAAGACTTTGATCTGGAAGGGTGCAACCC 1456175 Query 34918 GCACTCGGCCCTGAAGATGGAGTTGGC 34944 || | || | |||||||| |||| Sbjct 1456176 ACATCCTGCTATTAAGATGGAAATGGC 1456202 Score = 315 bits (348), Expect = 6e-81 Identities = 560/807 (69%), Gaps = 19/807 (2%) Strand=Plus/Minus Query 6401 GCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCCTC-GCT 6459 |||| |||||||| | || | || || | ||||||||| | ||||| || ||| Sbjct 1456202 GCCATTTCCATCTTAATAGCAGGATGTGGGTTGCACCCTTCCAGATCAAAGTCTTCAGCT 1456143 Query 6460 CCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGG 6519 | |||||||| |||| | || | || || ||||||||| | ||| |||| || Sbjct 1456142 G-TGAAGTCATCAATTGTCGCAACTGTTCAAAGGATTTTGAGCGTTGAGAAAGGTCCTGG 1456084 Query 6520 CTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCC 6579 ||||| || ||||| | |||| | |||||||| ||||| ||||| || Sbjct 1456083 TTCTCGCTGAAGCTGAGTTTT---CCGC-------GATTCAGGTAAATATGTGCATCTCC 1456034 Query 6580 CAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAG 6639 | | |||| || | || || | || || || |||||| ||||| ||||| Sbjct 1456033 CCAAATATGTACGAAGTCACCTGTCTGCAGGCCAGTGATGGGAGCGACTATGTAGGTGAG 1455974 Query 6640 CAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATA 6699 ||| | || || | | ||||| |||| || ||||||| | || | || || Sbjct 1455973 CAGGGTATAGCTGGAGACTTTGAAGGGCAGGCCCTGGTCCATGTCCACAGAGAGCTGGTA 1455914 Query 6700 GAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGG 6759 ||| ||||| ||||||||| ||| | |||||||| ||| |||||| |||||| || || Sbjct 1455913 CAGCGGGCAGTACAGCTCCCAGTTCACCACGTAGAACTGGTAGAGGGCGTGGCAGGGAGG 1455854 Query 6760 GAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATC 6819 ||||||||||||||||| || ||||||||||| | |||||| | || || ||||| || Sbjct 1455853 CAGCGCCATCAGAGGGAGCTCTTTCGGGTTCCAGGTGCACATGATGAGTCTCCTGTCGTC 1455794 Query 6820 AGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATA 6879 |||||| || | ||||| |||||| | ||||||||||||| ||| || ||||| || Sbjct 1455793 AGGGTTGGTTTTGATGGTGTTGATCACCTTCTGCAGCTGGTCCATTCCTTGACCCGAGTA 1455734 Query 6880 GTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGG 6939 || | ||| | || || || |||| || | ||||||||||| || || || || Sbjct 1455733 ATCTGACTCGATGCCTTTGTAGTCAGCCCTGAAATACCTCCACTGGAAGCCATAAACGGG 1455674 Query 6940 GCCCAAGTCGCCCTCCTCCCGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACC 6998 ||||| ||| || |||| | | ||| |||||| | ||| ||| ||||||| ||||| Sbjct 1455673 GCCCAGGTCCCCTTCCTGATG-GCTGGAAAACCCCAGGCTGTTCAGGAAGTCTC-AGACC 1455616 Query 6999 CGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCC 7058 | || ||||||||||||| ||| || |||| || |||| || ||| ||| Sbjct 1455615 TGCTGGCATCCCAGATCTTCATGCCCTTAGA--AGAGTTCTTTGGCATT-GTGCATCCCT 1455559 Query 7059 TCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCA 7118 | | ||||||||||||||||| | || ||||||||| |||||| || ||| |||||| Sbjct 1455558 TGATAAACCACAGCAGCTCCTCCAAAACACCCTTCCAGAACACACACTTGGTCATCAGCA 1455499 Query 7119 GCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCG 7178 | ||||||| | | ||| |||| | |||| ||| | ||| || || | || | Sbjct 1455498 GGGGAAATTGATCTCACAGGCTGTA-GGCACCTGAATGCTGGACAACGACAGCATGCCTG 1455440 Query 7179 TCCCGGTCCGGTCCCCCTTCCGGTAGC 7205 | || | ||||| |||| ||| ||| Sbjct 1455439 TGCCTCTGGGGTCCTCCTTGCGGAAGC 1455413 >seq72168 Length=9498425 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||||| |||||| || ||||| ||||| || || |||||||| ||||| || | ||| Sbjct 6792514 TGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 6792573 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || || || || |||||||||||||||||||| ||| | || ||||||||| Sbjct 6792574 ATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACCACATAGAATTGG 6792633 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| || || |||||||||||||||||||| Sbjct 6792634 CAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGATC 6792674 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||||||||||||||||| || || |||||| |||||||||||||||| || | ||| Sbjct 6792674 GATCTCCCTCTGATGGCGCTGCCTCCCTGCCACGCCCTCTGCCAATTCTATGTGGTGAAC 6792615 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || || || || |||||||| | || ||||| ||| Sbjct 6792614 GGGGAGCTGTCCTGCCAGCTGTACCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTC 6792555 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||| || |||||| ||||||| Sbjct 6792554 AACATCGCCAGCTACGCCCTGCTTACCTACATGGTCGCTCA 6792514 Score = 114 bits (126), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||| ||| || |||| Sbjct 6796807 TAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTCCCCTTCCTGG 6796866 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||| |||||| | |||||| |||||||| ||||||| || ||||||||||| Sbjct 6796867 CG-GCTGGAAAACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCATCCCAGATCTT 6796925 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 ||| ||| ||| || || || |||| ||| |||| |||| Sbjct 6796926 CACACCCTTGGAAGACAGTTCTTTGGCGTTTGTGGACCCC 6796965 Score = 114 bits (126), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| |||| ||| |||| || || || ||| ||| |||||||||||||| || |||| Sbjct 6796965 GGGGTCCACAAACGCCAAAGAACTGTCTTCCAAGGGTGTGAAGATCTGGGATGCCAACGG 6796906 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCC 34406 ||| |||||||| |||||| | |||||| ||| | || |||| || ||| |||| | Sbjct 6796905 GTCCCGAGACTTCTTGGACAGCCTGGGGTTTTCCAGC-CGCCAGGAAGGGGACCTGGGAC 6796847 Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || || || ||||||||||| || |||||||| || || Sbjct 6796846 CCGTTTATGGCTTCCAGTGGAGGCATTTTGGGGCTGACTA 6796807 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||||||||| || ||||| | ||| || |||||||||||||| || | ||||||| Sbjct 6793619 TTCGGGTTCCAGGCACACATGATGATTCTCCTGTCATCAGGGTTGGTTTTGATGGTGTCG 6793678 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | ||||||||||||| |||| || ||||| || || || Sbjct 6793679 ATCACTTTCTGCAGCTGGTCCACTCCTTGACCCGAGTAATCTGC 6793722 Score = 98.7 bits (108), Expect = 9e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || ||||| || |||| ||||||||||||| | |||||||||||| | || Sbjct 6793722 GCAGATTACTCGGGTCAAGGAGTGGACCAGCTGCAGAAAGTGATCGACACCATCAAAACC 6793663 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||| || ||| | ||||| || ||||||||||| Sbjct 6793662 AACCCTGATGACAGGAGAATCATCATGTGTGCCTGGAACCCGAA 6793619 >seq73533 Length=2840070 Score = 158 bits (174), Expect = 1e-33 Identities = 271/394 (69%), Gaps = 27/394 (7%) Strand=Plus/Plus Query 34182 TGTTCGGCACACAGGCCCGATACAACCTTCGGGGCGAATTTCCGCTGCTGACGACGAAAC 34241 |||||||| ||||| || |||| ||| | | |||||| ||||||||||| || | Sbjct 2091324 TGTTCGGCGTGCAGGCGCGCTACAGCCTGAGAGATCCATTTCCCCTGCTGACGACCAAGC 2091383 Query 34242 GTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACA 34301 |||||| ||||||||| || || | | ||| |||| || Sbjct 2091384 GTGTGTTCTGGAAGGG-------------------TGATTTATCAAGGGATCCACAAATG 2091424 Query 34302 CCAAGGAGCTCTCGTCC-----CGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGA 34356 || |||| || | ||| | ||| |||||||||||| | | ||||||| | ||| Sbjct 2091425 CCCAGGAACTGTTTTCCAAGGGCAGGGCGTGAAGATCTGGAATACCAACGGGTCCCAAGA 2091484 Query 34357 CTTTCTGGACAAGC-GGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACG 34415 ||| |||||| | |||| |||||| | || |||| || ||| || |||| || || | Sbjct 2091485 CTTCTTGGACAGCCTGGGGTTTCCCAGC-CGCCAGGAAGGGGACCTGTGCCCCGTTTATG 2091543 Query 34416 GGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGAC 34475 | ||||||||||| |||||||| || || || | || | || || ||||| | Sbjct 2091544 GCTTCCAGTGGAGGTTTTTTGGGGCTGACTACAAAGGTATGGACTCAGATTACTCGGGTC 2091603 Query 34476 AGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAA 34535 | |||| ||||||||||||| | |||||||||||| | || | |||||| | ||||| Sbjct 2091604 AAGGAGTGGACCAGCTGCAGAAAGTGATCGACACCATCAAAACCAGCCCTGACGGCAGAA 2091663 Query 34536 GGATCGTGATGTGCGCGTGGAACCCGAAGGATCT 34569 | ||| | |||||||| |||||| ||| | ||| Sbjct 2091664 GAATCATCATGTGCGC-CGGAACCTGAAAGTTCT 2091696 Score = 158 bits (174), Expect = 1e-33 Identities = 271/394 (69%), Gaps = 27/394 (7%) Strand=Plus/Minus Query 6776 AGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG 6835 ||| | ||| |||||| |||||||| | ||| |||||| | |||||| | || | | Sbjct 2091696 AGAACTTTCAGGTTCCG-GCGCACATGATGATTCTTCTGCCGTCAGGGCTGGTTTTGATG 2091638 Query 6836 GTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCC 6895 ||||||||||| | ||||||||||||| |||| || ||||| || || | || | || Sbjct 2091637 GTGTCGATCACTTTCTGCAGCTGGTCCACTCCTTGACCCGAGTAATCTGAGTCCATACCT 2091578 Query 6896 CGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCC 6955 || || |||||||| ||||||||||| || || || |||| || ||| || ||| Sbjct 2091577 TTGTAGTCAGCCCCAAAAAACCTCCACTGGAAGCCATAAACGGGGCACAGGTCCCCTTCC 2091518 Query 6956 TCCCGAGATGGGAACCCCC-GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGAT 7014 | || | |||||| |||| | |||||| |||||| | ||||||| | | |||||| Sbjct 2091517 TGGCG-GCTGGGAAACCCCAGGCTGTCCAAGAAGTCTTGGGACCCGTTGGTATTCCAGAT 2091459 Query 7015 CTTCACCCCCCG-----GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCAC 7069 |||||| ||| | ||| | || |||| || || |||| ||| | | || || Sbjct 2091458 CTTCACGCCCTGCCCTTGGAAAACAGTTCCTGGGCATTTGTGGATCCCTTGATAAATCA- 2091400 Query 7070 AGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCG 7129 ||||||||| ||||||| || ||||||||||| |||||| Sbjct 2091399 ------------------CCCTTCCAGAACACACGCTTGGTCGTCAGCAGGGGAAATGGA 2091358 Query 7130 CCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACA 7163 | | ||| |||| || ||||| |||||||| Sbjct 2091357 TCTCTCAGGCTGTAGCGCGCCTGCACGCCGAACA 2091324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447843666885600