Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq71536 167 2e-36 seq60075 113 4e-20 seq72168 87.8 1e-12 >seq71536 Length=14703830 Score = 167 bits (184), Expect = 2e-36 Identities = 201/272 (74%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 1255 TTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAA 1313 ||||| |||| | | |||| | || ||||| | ||||| |||||||| ||| || Sbjct 9338996 TTAAGCTGTTCTCTGCAAACTTCCCAGGAAGTCTTAATTGTGACATGGCAGAAAAAGAAG 9338937 Query 1314 GCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCA 1373 || ||||||||||||||||| ||| | ||| | |||| |||||||| || || || Sbjct 9338936 GCTATAAGCCCAGAAAACATGGTCACCTACAGTGAGAACCATGGGGTTGTGGTCCAACCT 9338877 Query 1374 GCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTC 1433 || || || || | | ||||| || ||||| ||| | || || || | || |||||| Sbjct 9338876 GCCTATAAGGACAGGGTAAACATCACCGAGCTGGGATTCCACAAATCAGCCATCACCTTC 9338817 Query 1434 TGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCT 1493 |||||||||||| |||| |||||||| || |||| |||| | || || || ||||| ||| Sbjct 9338816 TGGAACACAACACTGGAGGATGAAGGTTGTTACATGTGTCTCTTCAATACCTTTGGCTCT 9338757 Query 1494 GGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 || ||||| ||||||| | || || ||||| Sbjct 9338756 GGAAAGATCTCAGGAACACCCTGCCTTACCCT 9338725 >seq60075 Length=1238 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 131 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 190 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 191 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 250 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 251 ATCGCCCTCTGGATGACTGA 270 >seq72168 Length=9498425 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | |||||| | |||||| || | || ||||||||| | || || || Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| | || | |||||||| ||||| || ||||||||||| | Sbjct 6792562 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 6792621 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || || | | | ||| || |||||||| |||| Sbjct 6792622 ACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCAT 6792662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414099306187720