Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq70448 172 1e-37 seq72916 168 2e-36 seq71171 167 5e-36 seq71311 109 1e-18 seq71820 98.7 2e-15 >seq70448 Length=578665 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| |||||||| || || || || || | ||| || | |||||| Sbjct 511429 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGTGCGGCCATCT 511370 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 511369 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 511310 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||| | || ||||| || ||||| ||| Sbjct 511309 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 511250 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 511249 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 511215 >seq72916 Length=12258079 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | || || | |||||| Sbjct 7817418 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817359 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | || |||||||| Sbjct 7817358 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817299 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | ||| |||||||| ||||| ||| Sbjct 7817298 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817239 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| || || | ||||||| Sbjct 7817238 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 7817206 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | || || | || ||| Sbjct 7817646 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 7817587 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | || |||||||| Sbjct 7817586 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817527 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | ||| |||||||| ||||| ||| Sbjct 7817526 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817467 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 7817466 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | || || | |||||| Sbjct 7817874 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817815 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||||||||| | || |||||||| Sbjct 7817814 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817755 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | ||| |||||||| ||||| ||| Sbjct 7817754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817695 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 7817694 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 >seq71171 Length=10874107 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| |||||||| || || || || || | ||| || | ||||| Sbjct 9049407 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCG 9049348 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||| | ||||| || ||| Sbjct 9049347 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9049288 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||| ||| | || ||||| || ||||| ||| Sbjct 9049287 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTC 9049228 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 9049227 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 9049193 >seq71311 Length=7776501 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||| ||||| ||||||| ||||| || | | ||| | | | | ||||||||||| Sbjct 2853827 AAGATGAAGGGTGGACTTCTTTTGAATACTGTCATCAGACAAAGCACGTCCATCTTCCAC 2853768 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||||| || || || || || | ||| || |||||||||| ||||||||| |||| ||| Sbjct 2853767 TTGCTTACCAGCAAATATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTAGAT 2853708 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || ||||| || || || || |||||||| ||| |||| ||||| | Sbjct 2853707 CTTGGTCTTTACATTTTCTATAGTATCCAAGAGTTCAACCTTGAGCATGATGGTCTTCCT 2853648 Query 211088 CGTGAGAGTCTTTACAAA 211105 | || || |||||||| Sbjct 2853647 TGCAAGGGTTTTTACAAA 2853630 >seq71820 Length=8892586 Score = 98.7 bits (108), Expect = 2e-15 Identities = 156/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||||| || || ||||| || | |||||||||||||| ||| || || | || |||| Sbjct 106111 GAAGTCGCAGCACCAGGTGCAGGG-GGACTCTTTTTGGAGGTTGTAGTCAG--AGAGTCC 106055 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 ||||| |||| || |||| | || || | | || |||||||| ||| ||| Sbjct 106054 AGCCATCCTCCAATTGTTTGCTGACAAATATCAAATGCTGCTGGTCAGGGGGATGCCCT- 105996 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||||| ||||| || ||| ||||| |||||||||||| | || |||| || | Sbjct 105995 CCTTGTGTTGGATTTTGGCTTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTTGAAGG 105936 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 |||| ||| | ||||| || ||||| | || | ||||| Sbjct 105935 TGATGGTC-TGCCCGTCAGGGTCTTCATGAAGATCTGCA 105898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158042137316450