Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq72916 145 2e-29 seq71956 131 4e-25 seq72023 91.5 4e-13 seq72968 87.8 4e-12 >seq72916 Length=12258079 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| |||| || ||| | ||||||| Sbjct 7817418 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817359 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || ||||||||| Sbjct 7817358 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817299 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || |||||| || | ||||| ||| Sbjct 7817298 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817239 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || | || || | ||| | |||||| Sbjct 7817238 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 7817206 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| |||| || ||| | ||| ||| Sbjct 7817646 AGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCGTCT 7817587 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || ||||||||| Sbjct 7817586 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817527 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || |||||| || | ||||| ||| Sbjct 7817526 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817467 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 7817466 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || ||||| || || |||| ||||| |||| || ||| | ||||||| Sbjct 7817874 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGCCCATCT 7817815 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || ||||||||| Sbjct 7817814 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCT 7817755 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || |||||| || | ||||| ||| Sbjct 7817754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCGAGGGTGATGGTC 7817695 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 7817694 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 >seq71956 Length=2248420 Score = 131 bits (144), Expect = 4e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 7581 TGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTG 7640 |||||| |||| ||||||||| | ||||| || |||| || ||||| ||||||||||| Sbjct 1806487 TGCCTTCATTATAATTTTCTTTATAGTTATACCTATTATAATCGGCGGATTCGGAAATTG 1806428 Query 7641 ATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAG 7700 | || |||| ||||| ||||| || ||||| || || ||||| | | || |||||||| Sbjct 1806427 ACTCATTCCATTAATAATTGGAGCCCCTGACATAGCATTTCCTCGTATAAATAATATAAG 1806368 Query 7701 TTTTTGATTACTACCGCCTTCCTTATT 7727 ||| |||||||| || |||||| |||| Sbjct 1806367 TTTCTGATTACTTCCCCCTTCCCTATT 1806341 Score = 131 bits (144), Expect = 4e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 7576 GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGA 7635 || || ||||| |||| ||||||||| | ||||| || |||| || ||||| |||||| Sbjct 1806692 GCTCACGCCTTCATTATAATTTTCTTTATAGTTATACCTATTATAATCGGCGGATTCGGA 1806633 Query 7636 AATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAAT 7695 |||||| || |||| ||||| ||||| || ||||| || || ||||| | | || ||| Sbjct 1806632 AATTGACTCATTCCATTAATAATTGGAGCCCCTGACATAGCATTTCCTCGTATAAATAAT 1806573 Query 7696 ATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||||||| |||||||| || |||||| |||| Sbjct 1806572 ATAAGTTTCTGATTACTTCCCCCTTCCCTATT 1806541 >seq72023 Length=103495 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||| | || || ||| | || ||| ||| ||||| |||||||||||||||| Sbjct 29230 CACTTCAGTACTTGGCTCCTTACTCCGGCTGTTCTATGGGAGAGTATTTTAGAGATAATG 29171 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||| ||||| |||||||| || || ||| |||||| Sbjct 29170 GCAAACACGCTTTGATCATCTATGACGACTTATCTAAACA 29131 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || || ||||| || || ||||||||||| || ||||||||||| |||||||| Sbjct 28795 AATACCTGTCCGTCAGTGATGGAAATAACATTTGTTGGAATATAAGCAGACACATCACCA 28854 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || || || | || ||||| || || || || ||||||||||| Sbjct 28855 GCCTGGGTCTCTATGACTGGTAAAGCAGTCAGGGAGCCACCACCAAA 28901 >seq72968 Length=5008929 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || || ||||| || || || |||||||| || ||||||||||| |||||||| Sbjct 2900910 GAAGATCTGTCCGTCAGTGATGGAAATGACATTTGTTGGAATATAAGCAGACACATCACC 2900969 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || || || | || ||||| || || || || ||||||||||| Sbjct 2900970 AGCCTGGGTCTCTATGACTGGTAAAGCAGTCAGGGAGCCACCACCAAA 2901017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191389377462620