Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq70384 203 3e-47 seq72168 136 3e-27 seq70139 91.5 1e-13 >seq70384 Length=4945429 Score = 203 bits (224), Expect = 3e-47 Identities = 387/571 (68%), Gaps = 8/571 (1%) Strand=Plus/Minus Query 29666 AGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29725 ||||| | || ||||||||| | || || || || || | | || || |||| | Sbjct 1456053 AGGTAAATATGTGCATCTCCCCAAATATGTACGAAGTCACCTGTCTGCAGGCCAGTGATG 1455994 Query 29726 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC 29785 |||| | ||||| ||||| || | ||||||| || || ||||||| || | || Sbjct 1455993 GGAGCGACTATGTAGGTGAGCAGGGTATAGCTGGAGACTTTGAAGGGCAGGCCCTGGTCC 1455934 Query 29786 ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 29845 |||||| | || |||||| ||| |||| | ||||| | || |||||| ||||| Sbjct 1455933 ATGTCCACAGAGAGCTGGTACAGCGGGCAGTACAGCTCCCAGTTCACCACGTAGAACTGG 1455874 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 | | ||| ||||| ||||| || ||||| ||| | ||||| |||||||||| ||| Sbjct 1455873 TAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGCTCTTTCGGGTTCCAGGTGCAC 1455814 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGA 29965 | ||||| | |||||| || |||||| | ||||| || | | || |||||||| Sbjct 1455813 ATGATGAGTCTCCTGTCGTCAGGGTTGGTTTTGATGGTGTTGATCACCTTCTGCAGCTGG 1455754 Query 29966 TCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTC 30025 |||| || |||||||| |||| ||||| |||| Sbjct 1455753 TCCATTCCTTGACCCGAGTAATCTGACTCGATGCCTTTGTAGTCAGCCCTGAAATACCTC 1455694 Query 30026 CACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT-- 30083 |||||||| || || || || |||||||| || || | || ||| ||| ||| Sbjct 1455693 CACTGGAAGCCATAAACGGGGCCCAGGTCCCCTTCCTGA-TG-GCTGGAAAACCCCAGGC 1455636 Query 30084 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 30143 ||| || ||||||| | | | | |||| ||||||||||| | ||||| | |||| | Sbjct 1455635 TGTTCAGGAAGTCTCAG-ACCTGCTGGCATCCCAGATCTTCATGCCCTTA--GAAGAGTT 1455579 Query 30144 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30203 |||||| || ||| | || ||| ||||||||||||||||||| || ||||||| | Sbjct 1455578 CTTTGGCATT-GTGCATCCCTTGATAAACCACAGCAGCTCCTCCAAAACACCCTTCCAGA 1455520 Query 30204 AGACCCTCTTGGTCGTGAGGAGGGGAAACTG 30234 | || | ||||||| | || |||||||| || Sbjct 1455519 ACACACACTTGGTCATCAGCAGGGGAAATTG 1455489 >seq72168 Length=9498425 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| |||||| | |||||| || || || | ||||||||||||||| |||||| Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| || | |||||| |||||||| || ||||| |||| | Sbjct 6792562 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 6792621 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || || || || | ||| ||||| ||||| || ||||| ||| Sbjct 6792622 ACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGA 6792666 Score = 113 bits (124), Expect = 4e-20 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || ||||||||||| || || | | | || ||| Sbjct 6796819 AAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTCCCCTTCCTGGCGG--CTGGAAA 6796876 Query 30077 CCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| ||||||| ||||||| ||| |||||||| ||||||||||| || ||||| Sbjct 6796877 ACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCATCCCAGATCTTCACACCCTTGG 6796936 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||||| |||||||||||| Sbjct 6796937 AAGACAGTTCTTTGGCGTTTGTGGACCC 6796964 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 |||| |||||||||||||||| |||||| | |||||| || |||||| | ||||| || Sbjct 6793617 CTTTCGGGTTCCAGGCACACATGATGATTCTCCTGTCATCAGGGTTGGTTTTGATGGTGT 6793676 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | || |||||||| ||||| || |||||||| |||| Sbjct 6793677 CGATCACTTTCTGCAGCTGGTCCACTCCTTGACCCGAGTAATCTG 6793721 >seq70139 Length=1650317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || || || ||||| || | ||||| ||| ||||| |||||| || ||| Sbjct 1356171 TTGAGTTCTCTACTTAGTACTACATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGG 1356112 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 1356111 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1356064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405793277980780