Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq71723 123 2e-23 seq74017 95.1 1e-14 seq71464 95.1 1e-14 >seq71723 Length=19027027 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || || | || || || ||||| ||| || |||| Sbjct 472179 AGCTCTTGTGAAAACGGACATTCAGATCGCTCTTCCCTCTGGATGCTATGGAAGAGTAGC 472120 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | ||||| ||||| | |||||||| || || || || || || || |||||| Sbjct 472119 TCCGCGTTCTGGCTTGGCTGCCAAACACTTCATAGATGTTGGAGCTGGAGTCATAGATGA 472060 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| ||| |||| | || Sbjct 472059 AGATTATAGAGGAAATGTTGGCGTTGTCCTGTTTAATTTTGGCAAAGAGAAAT-TTGAAG 472001 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 ||||||| || ||| | | || || || ||||| ||| Sbjct 472000 --TAAAAAAAGGTGATCGAATTGCGCAGCTCATTTGTGAA 471963 >seq74017 Length=2439271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| || ||||| ||||| || || ||||||||||||||||| || || | ||||| || Sbjct 46944 TACCAAATTTTCATTTACAATCCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGAT 47003 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| |||| || || || || || || ||||||||||||| ||| || | || ||||| Sbjct 47004 AAAATACTTCTCCTCGGGTTTGAGCTTGTTCCAGTGGGGCAGATCCTTTGATAGGTCAAC 47063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 32599 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 32658 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 32659 ATAAAATCAAAGGGATT 32675 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| || || ||||| || || || | || ||||| | || ||||| || Sbjct 43651 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCTCTTCTTC 43710 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || ||||| || ||||| || ||||| | |||||| || || ||||| || Sbjct 43711 AGCCAGAAGATGGCGGCGAAGGACCCCGAGAAGAACACGCCTTCCACAGCCGCAAAGGCC 43770 Query 4692 AC 4693 || Sbjct 43771 AC 43772 >seq71464 Length=6720225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||||| ||| |||||||| || || || || ||||||||||||||||| ||||| || || Sbjct 4557888 GTCTTTAATGTAAGTGTCGATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGC 4557947 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| || || || || || || | |||||||| | ||||||||| Sbjct 4557948 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTC 4557992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| |||||||| ||||| || | || ||||| | || | || || Sbjct 4556654 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 4556713 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || | ||||| || || |||||||| || ||||| ||||| ||||| || Sbjct 4556714 AGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGGCG 4556773 Query 4692 AC 4693 || Sbjct 4556774 AC 4556775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426660655235090