Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq70384 224 7e-54 seq72168 120 2e-22 >seq70384 Length=4945429 Score = 224 bits (248), Expect = 7e-54 Identities = 405/581 (70%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 27152 CGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCC 27211 || ||| |||||| | || || |||||| | || || || || || | | || | Sbjct 1456061 CGCGATTCAGGTAAATATGTGCATCTCCCCAAATATGTACGAAGTCACCTGTCTGCAGGC 1456002 Query 27212 CGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCC 27271 | |||| | |||| | ||||| ||||| || | ||||||| || || ||||| | | Sbjct 1456001 CAGTGATGGGAGCGACTATGTAGGTGAGCAGGGTATAGCTGGAGACTTTGAAGGGCAGGC 1455942 Query 27272 CGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA--TCGCTTAC 27329 | | |||||||| | || |||||| ||| | || | ||||| ||| || | || Sbjct 1455941 CCTGGTCCATGTCCACAGAGAGCTGGTACAGCGGGCAGTACAGCTC-CCAGTTCACC-AC 1455884 Query 27330 GTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 27389 ||| ||||| | | ||||||||| ||||| || ||||| || | ||||| ||||| Sbjct 1455883 GTAGAACTGGTAGAGGGCGTGGCAGGGAGGCAGCGCCATCAGAGGGAGCTCTTTCGGGTT 1455824 Query 27390 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 27449 ||||| ||||| ||||| | |||||| || |||||| | ||||| || | | || Sbjct 1455823 CCAGGTGCACATGATGAGTCTCCTGTCGTCAGGGTTGGTTTTGATGGTGTTGATCACCTT 1455764 Query 27450 TTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCC 27509 |||||||| |||| || |||||||| ||| | ||| | |||| || || | Sbjct 1455763 CTGCAGCTGGTCCATTCCTTGACCCGAGTAATCTGACTCGATGCCTTTGTAGTCAGCCCT 1455704 Query 27510 GAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 27569 ||||| |||||| ||||| || || || || |||||||| || || | || ||| ||| Sbjct 1455703 GAAATACCTCCACTGGAAGCCATAAACGGGGCCCAGGTCCCCTTCCTGA-TG-GCTGGAA 1455646 Query 27570 GCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 27627 ||| ||| || ||||||| | | | | |||| ||||||||||| | ||||| Sbjct 1455645 AACCCCAGGCTGTTCAGGAAGTCTCAG-ACCTGCTGGCATCCCAGATCTTCATGCCCTTA 1455587 Query 27628 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 27687 | |||| ||||||| || ||| | || ||| ||||||||||||||||||| || Sbjct 1455586 --GAAGAGTTCTTTGGCATT-GTGCATCCCTTGATAAACCACAGCAGCTCCTCCAAAACA 1455530 Query 27688 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTG 27728 ||||||| || || | ||||||| | || |||||||| || Sbjct 1455529 CCCTTCCAGAACACACACTTGGTCATCAGCAGGGGAAATTG 1455489 >seq72168 Length=9498425 Score = 120 bits (132), Expect = 2e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| |||||| | |||||| || || || | ||||||||||||||| ||||| Sbjct 6792502 AGGCCAGTGATGTGAGCGACCATGTAGGTAAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 6792561 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| || | |||||| ||||| || || ||||| || | Sbjct 6792562 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCCCCGTTCACC 6792621 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || || || || | ||||||||| ||||| || ||||| || Sbjct 6792622 ACATAGAATTGGCAGAGGGCGTGGCAGGGAGGCAGCGCCATCAG 6792665 Score = 116 bits (128), Expect = 3e-21 Identities = 129/170 (76%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || || || ||||||||||| Sbjct 6796797 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACGGGTCCCAGGTC 6796856 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 27606 || || | | | || ||| ||| ||||||| ||||||| ||| |||||||| Sbjct 6796857 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAAGAAGTCTCGGGACCCGTTGGCA 6796914 Query 27607 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||||| || ||||| || || ||||||| |||||||||||| Sbjct 6796915 TCCCAGATCTTCACACCCTTGGAAGACAGTTCTTTGGCGTTTGTGGACCC 6796964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369170663234630