Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq72823 118 1e-21 seq71464 118 1e-21 seq71723 111 2e-19 >seq72823 Length=4236179 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 488520 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 488579 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || ||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 488580 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 488639 Query 77247 TTTCTGAGACCAT 77259 ||| | | ||||| Sbjct 488640 TTTTTTATACCAT 488652 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 515051 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 515110 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || ||||| || || | ||| | ||||||| Sbjct 515111 TACGTTTCAATTGCGGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 515170 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || || |||||| || Sbjct 515171 ATATGTTGCGGCCTTTCAGCC 515191 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | || Sbjct 502168 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 502227 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| |||||||| | || || ||||||| || Sbjct 502228 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 502287 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 502288 TCCAGGTAAATAGC 502301 >seq71464 Length=6720225 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | |||||| ||||| || || || ||||| ||||| ||||| ||| Sbjct 4556654 TCATCTCTGCTAATAAGTTCGTTGGAAAAGGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 4556713 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | ||| ||||| || |||||||| || ||||| ||||||||||| ||| Sbjct 4556714 AGCCAGAAAATGGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCCGCAAAGGCG 4556773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| ||||||||||| |||| |||| |||| ||| ||| || ||||| ||||| Sbjct 4555458 GTTCATTTAAAAGTCAGCATCCAAAGTAAAAGAATTCTCTGTAGGACTGGACATGACTCC 4555517 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || || || || ||||||| || || Sbjct 4555518 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTCGTCTTCCCTTCCAGAGAAAT 4555577 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| ||||| || ||||| ||||| Sbjct 4555578 ATTCTCCATGAAGTCAAACGGATT 4555601 >seq71723 Length=19027027 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 45924 TTGCACTTCCTTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 45983 ||| ||||| | | || || ||||| || |||| | | || || || || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 45984 ACCCGTATTTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCC 46043 ||| | |||| ||||||| | ||||| ||| ||| | ||| | || |||| | || Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 46044 TCTATAATCTTCATCTATTACTCCCCCTCCCACATCGAT-ACCTTTTAG--AGACAGTCC 46100 |||||||||||||||||| ||||| |||| ||||| || | | || | || || || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTATGAAGTGTTTGGCAGCCAAGCC 472109 Query 46101 AGATCTAGGAGCTATTCTTCCATAACAGAATTTGGGCATAGACATCCGAATATCTGTTTT 46160 ||| | ||||||| ||||||||| || ||| | || ||| |||| || ||||| Sbjct 472110 AGAACGCGGAGCTACTCTTCCATAGCATCCAGAGGGAAGAGCGATCTGAATGTCCGTTTT 472169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694019892507200