Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq72823 127 3e-24 seq71723 102 1e-16 >seq72823 Length=4236179 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| |||||||||||||| || || |||||||| ||||| | || Sbjct 488520 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 488579 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || ||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 488580 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 488639 Query 75842 TTTCTGAGACCAT 75854 ||| | | ||||| Sbjct 488640 TTTTTTATACCAT 488652 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 515051 GTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGGTTG 515110 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || ||||| || |||| || | ||||||| Sbjct 515111 TACGTTTCAATTGCGGCATCAATGTCTTCTTTGTGAATCCCCACAGATACTCTCATCAAC 515170 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || || | ||| Sbjct 515171 ATATGTTGCGGCCTTTC 515187 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| ||||| || ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 501715 ATATAACTTCTCAAACTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 501774 Query 76570 CATCAATGACCACTC 76584 |||||| ||||| || Sbjct 501775 CATCAAAGACCAGTC 501789 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| || ||||| ||||| | || || || || || || || || | || Sbjct 521724 CTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGACACAGCAATCCTTGCTGCCAAGATG 521783 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||| | | Sbjct 521784 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCAGT 521843 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || ||||| | || | || || || |||||||||| Sbjct 521844 TCCACTGTGGTGACTCCACTGTACAAGCCCTGGATTACTTTCATGG 521889 >seq71723 Length=19027027 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 44411 TTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATC 44470 ||| ||||| |||| || || ||||| || |||| | | || || || || |||| ||| Sbjct 471930 TTGAACTTCTTCTATTTCTGGGTAATAAATCCGTTCACAAATGAGCTGCGCAATTCGATC 471989 Query 44471 ACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCC 44530 |||| | |||| || ||| | ||||| ||| ||| | || | || |||| || || Sbjct 471990 ACCTTTTTTTACTTCAAATTTCTCTTTGCCAAAATTAAACAGGACAACGCCAACATTTCC 472049 Query 44531 CCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT 44569 ||||||||||||||||| |||||| |||| ||||| || Sbjct 472050 TCTATAATCTTCATCTATGACTCCAGCTCCAACATCTAT 472088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712268430153600