Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq72916 136 9e-27 seq70448 123 6e-23 seq71171 114 3e-20 >seq72916 Length=12258079 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || ||||| || || ||||| || ||||||||||| |||| | ||| Sbjct 7817884 CCTCAGACGGAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 7817825 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 7817824 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCC 7817765 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTC 152059 ||||| ||||| || || |||||| |||| | | |||| ||| || || || Sbjct 7817764 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTC 7817708 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||||||||||| |||||| Sbjct 7817707 GAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817663 Score = 132 bits (146), Expect = 1e-25 Identities = 165/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || || || ||||| || ||||||||||| |||| | ||| Sbjct 7817427 CTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 7817368 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 7817367 CGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCC 7817308 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| || || || Sbjct 7817307 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTCG 7817251 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| ||||| ||||||||||||| ||||||| Sbjct 7817250 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 7817206 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || || || ||||| || ||||||||||| |||| | ||| Sbjct 7817655 CTCAGACGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 7817596 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||| ||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 7817595 CGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCC 7817536 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| || || || Sbjct 7817535 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTCG 7817479 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||||||||||| |||||| Sbjct 7817478 AGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 7817435 >seq70448 Length=578665 Score = 123 bits (136), Expect = 6e-23 Identities = 165/228 (72%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || ||||||||||||||||| || || ||||| || | | ||| Sbjct 511439 CCTCAGACGGAGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGAAAGAGT 511380 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 511379 GCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 511320 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || || ||| |||| | | | || ||| ||| || || Sbjct 511319 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTC 511263 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || ||||| || || |||||||| |||| ||||||||| Sbjct 511262 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 511215 >seq71171 Length=10874107 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||||||||||||||| || || ||||| || | | ||| | ||||| Sbjct 9049407 AGGACCAGGTGAAGAGTAGACTCTTTCTGAATATTGTAGTCAGGAAGAGTGCGGCCATCG 9049348 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 9049347 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 9049288 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | | || ||| ||| || || || || || Sbjct 9049287 TGGATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATG 9049231 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| ||||||||| Sbjct 9049230 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 9049193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152716041823830