Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq71882 212 9e-50 seq72798 109 8e-19 >seq71882 Length=3594170 Score = 212 bits (234), Expect = 9e-50 Identities = 237/317 (75%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||| |||||||||| | ||||| | || ||||| ||||| ||||| | |||| Sbjct 2487677 GAGCTCTGCATCGGGAACACTGAACGACGTGAAAGGACAGCCCTTCACGTTAGTGCAGAT 2487618 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 |||||||| || | ||| | |||| |||| || || || ||||| || || || || Sbjct 2487617 GAGAGACTGGATGGAGGCGGTGTTGATGATCTGAAAACCTACTTCTCCTCCAAAAGTACT 2487558 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 |||||||||||| ||| ||||| ||| ||| ||||||| ||||| | |||||| || Sbjct 2487557 CGGCTTCCAGTACTGCGGCGAGCATATGGGGTTACCCATGAGTCCTTTCAAGGAGAAGGG 2487498 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 ||| |||| || | ||| |||| |||||||| |||| || || ||||||||||||| Sbjct 2487497 AGCTCCCATTTCCACCATGGTCTCCCCGAAGATAGCGTCTGGCCGAGGCTTTTCCACCAG 2487438 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 || ||| |||||||||| ||| |||| ||||||||| ||| | | || ||||| Sbjct 2487437 GAGGGCGGGATACAGCTCCATAGCGTCGATGTCTCCGTAGAGGCCTTCCAACTCTGCAGC 2487378 Query 8569 GATCTCCTTTTCTCCTG 8585 || ||||| ||||||| Sbjct 2487377 TATTTCCTTCTCTCCTG 2487361 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| |||||||| ||| || ||||| || || | || |||||||||||| Sbjct 2485923 GTCTGGAACAGGCGCTCGTCATCCCACTCCGGATGCTCCCGTCTGAGCACATCGCACACC 2485864 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 |||||||| |||| |||||||| |||||||||||||| || || || |||||||| || Sbjct 2485863 CTGTTGTGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGACCGGGCACCAGGCCGAAG 2485804 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | |||| || || || | ||| || |||||||| ||| Sbjct 2485803 ACCTCCTGGCCCACCGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGC 2485744 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||| ||||||||| || || || ||||| || |||||||| Sbjct 2485743 ACCTGGGTGTCTTTGACTGACGGAGGGTACATCTCTCCGTCAAT 2485700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| |||||| | ||||| || || || ||| | ||| | | | ||| Sbjct 2484645 CTTACCCCATGGGACAGTCCAGTGGTGAAAGCAGGTCCACGCTTCGGATCTGACTTGAAA 2484586 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 ||||| || ||||| || ||| |||| ||||||||||| | || ||||| ||||| || Sbjct 2484585 AACTGATGGGTGAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCTTGGGGGTCA 2484526 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | || | |||||| |||||||| ||| Sbjct 2484525 GGGATGAACTTTCTTCTTAGAAGAACTTTTTCCAGAAC 2484488 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | | || ||||| || | | | | Sbjct 2484117 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCGGCCACAGGAGGGAGGACTCGGGTG 2484058 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||| || ||||| |||||||||||| ||| | |||||| |||||| | Sbjct 2484057 TAGTAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCAAAGTCCGAGTTGTAAGTT 2483998 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 ||||| ||||||| ||||| ||||| |||| Sbjct 2483997 GGAGGACTGTCAACCAAATGTGATCTGGCTGA 2483966 >seq72798 Length=3738091 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || | ||| |||| || || || || ||||| |||||||||||| | || || Sbjct 3636580 TTGACAATGCTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 3636521 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || ||| Sbjct 3636520 CAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCAATCATACTC 3636461 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || |||||||||| ||| || || ||||| | | || || | ||| | ||| | Sbjct 3636460 TCCCCGAAGATGGAGTTTGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAAAACTCTAAG 3636401 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | || |||||| || | || | || || || |||||||| || |||| Sbjct 3636400 GCATTGATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTCCCCTG 3636346 Score = 100 bits (110), Expect = 4e-16 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || ||||||||||| |||| | || |||||| | || || || |||| | |||| Sbjct 3626747 GTACTTACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 3626690 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | ||| ||||| |||| Sbjct 3626689 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCTTGGG 3626630 Query 9765 GATCGGGAGTGAAGGTCCTCCGAAGAAG 9792 |||| || |||| |||||| ||||| Sbjct 3626629 GATCAGGGATGAACTTCCTCCTGAGAAG 3626602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716207147459200