Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq26 206 3e-48 seq117 95.1 1e-14 seq136 91.5 2e-13 >seq26 Length=26652979 Score = 206 bits (228), Expect = 3e-48 Identities = 562/856 (66%), Gaps = 7/856 (1%) Strand=Plus/Plus Query 16667 CCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726 ||||| || || || ||| || | || || || | ||| || || || || ||| | Sbjct 3407770 CCCATCCTCTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAA 3407829 Query 16727 ATATTCTCCATGAAATCAAAAGGATTAGTAGC-TGAAAATATT--TTAGAGTACCCCAGT 16783 |||| ||||||||| || || ||||| | |||||| | || | |||||||| Sbjct 3407830 ATATGCTCCATGAAGTCGAATGGATTTTCCACATGAAAAACCTCCTTGTTGAACCCCAGT 3407889 Query 16784 TCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATT 16843 || || | || || || || ||||| || || || |||||| | ||||||||| Sbjct 3407890 TCCAGCATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATC 3407949 Query 16844 CCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC 16903 || || || | || || | || || || | || ||||| || | || | Sbjct 3407950 CCGATGAG-CTCACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTG 3408008 Query 16904 TTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGA 16963 |||| || |||| | ||| || ||| | || ||| || || |||||||| Sbjct 3408009 ATAATGATCTCCTTCACTCTCTACTCTGAGGGTTTGTGCACAAGGTGCTTGAACATCAGG 3408068 Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || || || || || || || |||||||||||||| ||||| ||| ||||| || | Sbjct 3408069 CAGGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGA 3408128 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| |||| ||||||| | | | || |||| || || || || |||||||| Sbjct 3408129 CCAGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAG 3408188 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || || || | || ||||| || | | ||||| | || || | ||||||| | | Sbjct 3408189 ATCCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCA 3408248 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 | ||| | |||| || || || | ||| ||||| ||| || || |||| || Sbjct 3408249 AGCCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTA 3408308 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | |||| |||| | ||| | | || || || || || || ||||||||| Sbjct 3408309 AACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACTGTACATT 3408368 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 || || || || || |||||||| || || || || || || || |||||||| | || Sbjct 3408369 TCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATC 3408428 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 |||||||| | ||||| ||| | ||||| ||||| | ||||| ||||| || || Sbjct 3408429 TGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAGCA 3408488 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCC 17443 || || | | | ||| ||| |||||| | || | || | || | ||||| | Sbjct 3408489 AAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAGTGC 3408548 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 | | |||||||| | ||||| | || | |||||||| || | || || ||| Sbjct 3408549 TGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTCTTA 3408605 Query 17504 TACATATTCCAAATAT 17519 ||||| | |||||||| Sbjct 3408606 TACATCTGCCAAATAT 3408621 >seq117 Length=6347111 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/286 (68%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 17240 GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCG 17299 || ||||| || || ||||||||||| || |||||||| |||| ||| || || | || Sbjct 1408443 GTGTCGATAAGGAGACTGTACATTTCAGAATGTATGTTTTCCAGGGCCATTTGGTAACCA 1408384 Query 17300 TAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCG 17359 || || || ||||||| | |||||||| || | ||| | ||| | | ||| || Sbjct 1408383 TAGAAACAATGGGCTTCTGTCATTTGAACATCTTGGCTAAATTGCTCCACCAAATTCTCA 1408324 Query 17360 TTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCG 17419 || || ||| ||||| || || ||| |||| ||||| ||| || || | || Sbjct 1408323 TTGACTTTGCAATCGCTGGCAAGGAGAAA-GCCAGAATATGTGAAAT--AAAATGTCTCC 1408267 Query 17420 TCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTC 17479 || || | || | ||||| || ||||| || |||||| || || | ||| Sbjct 1408266 TCAGGCTTTAGGGCTTCCCAGTGCTGGGTGTCTTTCAATTAATCCACCTCCTCAGCTGTC 1408207 Query 17480 CAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGT 17525 ||||| |||| ||| || |||||||| | ||||| ||||| || Sbjct 1408206 CAAAAGGAAGCCCCTGGTTTCTTATACATCTGCCAAACATCATGGT 1408161 >seq136 Length=5168023 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||||||||| ||||||||||| ||||| || | || ||||| ||| ||||||| Sbjct 4986658 CCTCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCT 4986717 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || | || || || || |||||||| || || || |||| ||||| | Sbjct 4986718 TGAGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGG 4986777 Query 17106 CGA 17108 ||| Sbjct 4986778 CGA 4986780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517518241245720