Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq26 187 3e-42 seq48 116 4e-21 seq136 102 8e-17 >seq26 Length=26652979 Score = 187 bits (206), Expect = 3e-42 Identities = 400/595 (67%), Gaps = 7/595 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || ||||| || || | || ||||||||||| ||||| Sbjct 3408051 AGGTGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGT 3408110 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 ||||||||| || | || |||||| |||| ||||||| | | |||| |||| ||| Sbjct 3408111 CAGTTGGAAAAGGTGAGACCAGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCA 3408170 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || || || |||||||| || || || | | ||||| || | | ||||| | || Sbjct 3408171 AAAGAACCGGAAAAGAAGATCCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAG 3408230 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 || | ||||| | | || ||| | |||| || || || | || || || | Sbjct 3408231 GTGACCTCTTTGTCCCCAAGCCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGC 3408290 Query 16424 ATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCA 16483 || || || |||| |||||| |||| |||| | || | | || || ||| Sbjct 3408291 ATGGTCTCGATGGTGGTAAACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCA 3408350 Query 16484 ATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAG 16543 || || | |||||||||||| || || || || || ||||| || || || |||||||| Sbjct 3408351 ATAAGGAGACTGTACATTTCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAA 3408410 Query 16544 CATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACG 16603 || || || || | || || ||||| | |||||| ||| |||| ||||| || | Sbjct 3408411 CAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGT 3408470 Query 16604 ATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAG 16661 || || || || |||||||| || | | | ||||| ||| |||||| | || ||| Sbjct 3408471 ATGCCATCGCTGGCAGCAAAGAAAGAGAGGACATGTG--AAATAAAATATCTCTCCCCAG 3408528 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 | || | ||| | | | |||||||| | ||||| | || | |||||||| Sbjct 3408529 GCTTTAGTGCTTCCCAGTGCTGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAA 3408585 Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || || | || || |||||||| | |||||||| | ||| | || ||||| Sbjct 3408586 AGGAGGCTTCGGCTTTCTTATACATCTGCCAAATATTGTGGTACTCGATAGGAAA 3408640 >seq48 Length=20532749 Score = 116 bits (128), Expect = 4e-21 Identities = 543/853 (64%), Gaps = 28/853 (3%) Strand=Plus/Minus Query 15931 tttttCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGA-T 15989 ||| || ||||| || ||||| || |||||||| ||||||||||||||||| |||||| | Sbjct 14858657 TTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATATTTTCCATAAAATCGAAGGGATT 14858598 Query 15990 TAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 | | ||||||| | ||| ||| | || |||||| | ||||| || | ||||| | Sbjct 14858597 TTCTCCCTGAAAA-ACCTTTGAGAATCCAAGTTCCACCAGCAATCTGTCCACCACAAACT 14858539 Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109 | ||||| || ||| || | || || || | || || | | | || |||| || Sbjct 14858538 CAATATACTGCTTCATCAAAACACAGTTCATCCTGATCAGACCGAATAGCAGGGCTTCTG 14858479 Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTC-GTGTTTCA 16168 | ||||| | | || || || || ||| | ||||| || | | | || | | Sbjct 14858478 TCAAAAACTCCTACTCGATTCTGACAGCATCTATGATGATCTCCTGGACCCAGTCCTCCT 14858419 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 | | | | | ||| | | ||||| || || || || || || || | ||| || Sbjct 14858418 CATGCT-TGTTCATTAAATACTGGAACATCAGGCAGGCAAATTCACAGTGAAATCCCTCA 14858360 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||||||||| ||| || || | |||||||| |||| ||||| | | Sbjct 14858359 TCTCTGCTGA----------GGAGAAGGTGAGGCCTGGCATGAGGCCTCTCTTCTTCAGC 14858310 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| || || |||| ||||| | ||||| | || || || | ||| || || | Sbjct 14858309 CAGAAAATGGCCACAAAGGACCCTGTGAAGAACACTCCTTCCACTGCTGCGAAGGCCACC 14858250 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | ||| | | | || | | | | ||||| | |||| || |||||| Sbjct 14858249 TCCCTCTCCCTGAAAGCAGACTTTCTGTCTGCTATCCACCGCAAGGCCCAGTCTGCTTTT 14858190 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAA--ACAATTTCTCTTTTTCCTGAATAT 16466 | || | | | ||||| ||||| || | |||| | || ||| || || || | | Sbjct 14858189 TTCTTAACATATTCCATTGTTTCAATTCCATTAAATAAAAATTCCCTCTT--CTCGAAGT 14858132 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 | | || ||||| || || || || || | || |||| | ||||| ||| | Sbjct 14858131 CTCTGAT----GTATCTATGAGCAAGCTATATGTCTCATAGTGAACGTTCTTGATGAGGA 14858076 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 |||| || || |||||||| | || || | | || |||||| | || | || Sbjct 14858075 TCTGGAAGCCGTAGAAGCAGCAAGGTTCAGGGACCTGCACTTCCTGGCTGAAGTGCTCTA 14858016 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 ||| || | ||| || || || ||||| || ||||||| || || ||||| || | Sbjct 14858015 CCAAATTTTTATTTACAATTCCATCACTGGCTGCAAAAACGGCTAAGATGTGAGAGATAA 14857956 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 |||| || || || | | | || | | ||| | | ||| || |||| || || | Sbjct 14857955 AATACTTCTCATCGGGTTTGAGCTTGTTCCAGTGAGGCAGATCCTTTGATAGGTCAACCT 14857896 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCA-CTG--CCTTTTTATACATTTTCCAAATATCATTGT 16763 |||||| ||||||||| | || ||| ||| ||||| | ||||| |||||| || Sbjct 14857895 CTTCTGCTGTCCAAAAG---GACACCTGCACCTGCTTATAAAGCTTCCAGATATCAGGGT 14857839 Query 16764 ATTGTATGGGAAA 16776 | || | ||||| Sbjct 14857838 ACTGGACAGGAAA 14857826 >seq136 Length=5168023 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| ||||||||||||||||| || | || |||||| ||| |||||||| Sbjct 4986660 TCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCTTG 4986719 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| || | ||||| || || |||||||| || || || || | ||||| ||| Sbjct 4986720 AGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGGCG 4986779 Query 16346 A 16346 | Sbjct 4986780 A 4986780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511387365356280