Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq17 105 5e-18 seq41 93.3 3e-14 >seq17 Length=29327949 Score = 105 bits (116), Expect = 5e-18 Identities = 253/380 (67%), Gaps = 17/380 (4%) Strand=Plus/Minus Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTG 19023 |||| | ||||| || ||||| || ||| | | || ||||| ||||| | ||||| | Sbjct 14730944 TCCCTCTGATGGTGCTGCCTCCCTGCCACGCCCTCTGCCAGTTCTACGTGGTGAACGGAG 14730885 Query 19024 AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACA 19083 | |||||||| | |||||| | || |||| |||||||| || ||||| Sbjct 14730884 AGCCGTCCTGCCAGCTGTACCAGCGTTCCAGGGACATGGGCCTGGG---------CAACA 14730834 Query 19084 TTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAG 19143 | || | | || || || |||||||| || || ||||| || || | | | || | Sbjct 14730833 TCGCCAGCAACGCCCTGCTCACCTACATGGTCGCCCATGTCACTGGCCCGCAGCCAGGTG 14730774 Query 19144 ATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 | || | ||||| || | ||||||||||||||| ||||||| || || | | ||| Sbjct 14730773 ACTTTGTACATACTTTGAGAGATGCACATATTTACCTGAATCACATTGAGCCGCTGAAAA 14730714 Query 19204 TGCAGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAAC 19261 ||||| ||| || || ||||||||| || | ||| |||||| || Sbjct 14730713 CTCAGCTTCAGCGAGAACC----GACCTTTTCCAAAGCTCAGAATCCTTCGAACAGT-TG 14730659 Query 19262 AGA-TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccc 19320 ||| || | ||||| | | || | |||||||| || || || |||||||| || Sbjct 14730658 AGACCATTGATGACTTCACAGCTGAACACTTTCAGCTGGAAGGGTACAATCCACATCCTG 14730599 Query 19321 cccTAAAAATGGAAATGGCT 19340 | | || |||||||||||| Sbjct 14730598 CTATTAAGATGGAAATGGCT 14730579 >seq41 Length=20498451 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 18964 TCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTG 19023 |||| | |||| || ||||| || || | | || ||||| ||||| | ||||| | Sbjct 11146729 TCCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTACGTGGTGAACGGAG 11146788 Query 19024 AATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACA 19083 | | |||||||| | |||||| | || ||||| |||||||| || || || ||||||| Sbjct 11146789 AGCTGTCCTGCCAGCTGTACCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTCAACA 11146848 Query 19084 TTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 |||| | || || || || |||||||| || || || || || || || Sbjct 11146849 TTGCCAGCTACGCCCTGCTCACCTACATGGTCGCCCACGTCACTGGCCT 11146897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399483409189305