Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq42 286 2e-72 seq14 102 6e-17 >seq42 Length=20331017 Score = 286 bits (316), Expect = 2e-72 Identities = 356/482 (74%), Gaps = 13/482 (3%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 || || | |||||| |||||||||||||||||||||||||| | ||||| || || | Sbjct 14871752 TAGTAGTTATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTTCTCCTGGATC 14871811 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||||| | || | | |||| || ||||||||| || | | ||||| ||||||| Sbjct 14871812 TCAGAAAGCATACCTAGGTATTTTAG---AAGTTTGTAGTTTTTCAAATCAATTTCTGGA 14871868 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| |||||| |||||| || || ||||||| |||||||| || || |||| | | Sbjct 14871869 AAAAATGTGTCATTTTCAAATTCCTGTATGATCCATGTCACAAATAGCTTGAGATAGGCT 14871928 Query 4147 GGATAACTCATA-GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTAC 4205 || || ||| | ||||| ||| |||||||||||||| | |||||| |||||||| || Sbjct 14871929 GGTCAATTCACAAGCTTCAGGATAGACAGAACTACCTCCCACTATCCAAACCATGTCCAC 14871988 Query 4206 TTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAA 4265 |||||||||||||||||| || || |||||| ||| |||||| | ||| | | | Sbjct 14871989 TTTATTTGCTAATTCTGGTTGCTCAATAAGTTGTAAGACATCATTCAGACTTTGGGAAAG 14872048 Query 4266 AAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCC 4325 ||||||||||| |||||| | | ||||| | || |||| | ||||| | | || Sbjct 14872049 AAAATGAGCTCCTTGTGGAGG----TAGAGTTCTCTACTTGGAACTATATTAACTGT-CC 14872103 Query 4326 TTTTAAAGGCCGGTTCTTCTCAGGAATT-GAGAACCAAGTCTTTTTACCCATAATCACTA 4384 || |||||| | | ||| |||||| ||||| | ||||| ||||||||||||| | Sbjct 14872104 TTCAAAAGGCAAG---TCCTCGGGAATTGGAGAATGAGGTCTTCCTACCCATAATCACCA 14872160 Query 4385 AATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCAT 4444 |||||| || || | | ||||| | || | | |||||||||| | || || |||| Sbjct 14872161 GATTCTGCTTGTCATTTGCGGAAGAGGCTGTTGCCCTTCTTTGGAAGTACTTGAATTCAT 14872220 Query 4445 TC 4446 || Sbjct 14872221 TC 14872222 >seq14 Length=33454342 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || || || | |||||||||| | || ||||| || ||||||||||| Sbjct 1459884 CTTGAGTTCTCTACTTAGTACTATATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGG 1459943 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| | ||||||||||| | |||||||||| || Sbjct 1459944 AATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1459992 Score = 98.7 bits (108), Expect = 7e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120 ||||||||| ||||||| |||||||||||| ||||||| |||||| || |||||||||| Sbjct 1452949 TGTATTTCTTCAGATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCATGATCC 1453008 Query 4121 TAGTCACAAACAGTTTAAGATCGC 4144 | ||||||||||| || | || || Sbjct 1453009 TTGTCACAAACAGCTTGACATGGC 1453032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 4157 TAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTA 4216 || || | || ||||||||||| || || | |||||| |||||||| ||||| |||||| Sbjct 1454523 TACCTACCTTGTACACAGAACTGCCGCCCACTATCCACACCATGTCCACTTTGCTTGCTA 1454582 Query 4217 ATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTC 4276 |||| || || || |||| || || |||||||| | ||| | || | |||||| || | Sbjct 1454583 ATTCCGGTTGCTCAATAAGCTTCAAGGCATCATCCAGACTTTGGGCAAGAAAATGGGCCC 1454642 Query 4277 TATGTGGAAGCTCCTTTAGTT 4297 ||||| | ||| | |||| Sbjct 1454643 CTCGTGGAGGTTCCCTGAGTT 1454663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361232580774479