Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq148 95.1 1e-14 seq117 91.5 1e-13 seq16 82.4 7e-11 >seq148 Length=4887613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 28935 TTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAA 28994 ||||||||| ||| || || || ||||||||||| ||| | || || |||| ||||| Sbjct 4051024 TTGTCATTT-TAATTAC-AG-GTCAAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAG 4050968 Query 28995 ACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCC 29054 ||||| ||| ||| ||||||| || || | | || | ||| || || Sbjct 4050967 ACCATCACCCTAGAAGTGGAACCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAG 4050908 Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || || || || || || |||||||| |||||||| || ||| Sbjct 4050907 GATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTTGAA 4050848 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| | | || ||||| || ||||| || |||||||| ||| |||| Sbjct 4050847 GATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCTACTCTGCACCTGGT 4050792 >seq117 Length=6347111 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || ||||||||||| ||||| || || |||| ||||| ||||| || ||| |||| Sbjct 1553976 GTCAAAATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAA 1554035 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 ||| || || | | || | ||| || || ||||||||||| | || Sbjct 1554036 CCCAGTGATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 1554095 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || || |||||| | ||||| || ||||||||| | | ||| | | || Sbjct 1554096 GACCACCAGAGGCTCATCTTTACAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGAC 1554155 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| ||||||||||| || ||||| ||| Sbjct 1554156 TACAACATTCAGAAGGAGTCCACTCTGCAC 1554185 >seq16 Length=31725842 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | ||||| | ||||| || ||||| || ||| |||||| Sbjct 21647254 AAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 21647195 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | || || || ||||| ||||| | || ||| Sbjct 21647194 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21647135 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||||| || |||||||| || || |||||||||||| ||| || | |||||| Sbjct 21647134 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTAC 21647075 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| || || ||||| | ||||| |||| || || || Sbjct 21647074 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATTCCGTGGTGG 21647025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428313923160995