Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1 269 3e-67 seq51 96.9 4e-15 >seq1 Length=78885850 Score = 269 bits (298), Expect = 3e-67 Identities = 263/339 (78%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||||| | |||||| ||||| | | | | ||| | ||||| | ||||||||||| Sbjct 3313996 GAGTAGGGCTTTGATGTCAGGCTCAATGTCGATGGTAGGAAAGCGGCGACTGTACCTGCG 3314055 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 ||| ||| || || | || |||| ||||||||| || |||||||||||||| ||||| Sbjct 3314056 CACCGGCACACCATCGGGGCCTACCAGGAACTTCTCAAAATTCCAGGCCACGTCATTGCG 3314115 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 ||| || || |||||| |||| || ||||||| ||| ||||| | ||||| || Sbjct 3314116 GCATACCGGGGACCAGATGATGAACTTGGGGTCGGTCATGAGCGCAGTGGGTTCGTCACT 3314175 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295 |||||||||||||||||||| ||||||| |||||||||||||||| | ||||| || || Sbjct 3314176 GGGCGCCGGCAGGGCCTCTCGAAGGAAGGTGAAGAGCGGATGTGCCTTCGCACCATTCAC 3314235 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355 |||||||||||||||||| | ||||| |||||||| || || || ||||||| || Sbjct 3314236 CTCGCACTTCTCGAAGAGAGTGAAGTTGGGCTCGAACCCACCACCGGGTCGGACGTATTT 3314295 Query 83356 CAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || || |||| ||||| | |||| ||||||||||| Sbjct 3314296 GAGCAAATGCAAAATCTCTTCGTTCTTTGCGTTTTCCTG 3314334 Score = 181 bits (200), Expect = 1e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| || |||||||| |||||||| || ||||||||||| || | | || | || Sbjct 3314548 CCTGGTGTCCAAACTGGTTGCACGGGAAGCCGAGCACTACCAGGCCTCTGGGCCCGAAGC 3314607 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||||||| ||||||||| ||| | |||||||||||| | ||||||||||| || | Sbjct 3314608 GCGCCTGCAGCTGGTTCATCTGGGTGAAGTCCCGGACCGTGGTGCCTCAGAGGGATGCCA 3314667 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| || |||||| | | |||| | || | || ||||| |||| Sbjct 3314668 CATTCTCGATGAGCAGCACTTTGCCCCGCAGGGAGCCGAGACTGAGCGGCTCTCCGCCGG 3314727 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAG 83600 | | ||||||||| ||||||| |||||||| Sbjct 3314728 TCAGCGGGCGTGCGGAGAAGGAGTACACAG 3314757 >seq51 Length=17238616 Score = 96.9 bits (106), Expect = 4e-15 Identities = 184/266 (69%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || || | | ||| || |||||| |||||| || || ||| Sbjct 15220251 GCAGCTGCGCAGCATCTATGAGAGCA-GCCTGTCTATTGGCAACTTTGCCTCCCGCCTGC 15220309 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 15220310 TGGTGCACCTCTTCCCCGAGCTCTTCACCCATGAGAACCTGCGCAAGCAGTACAACTGCA 15220369 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | || |||| |||||| Sbjct 15220370 GTGGCTCCCTGGGCAAGAAGCAG-CTAGACCCGGCTCGCATCAAGCTGATCCGCCACTAT 15220428 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 ||||| |||| |||| ||| || || || || |||| | |||| ||| Sbjct 15220429 GTGCAACTGCTCTACCCCCGGGCCAAAAATGACCGTGTCTGGACCCTGGAGTTTGTGGGC 15220488 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||| ||||||| Sbjct 15220489 AAGCTGGACGAGCGCTGCAGGCGCCG 15220514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608764617479160