Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq148 125 6e-24 seq117 114 1e-20 seq40 113 4e-20 seq12 91.5 1e-13 seq85 89.7 4e-13 seq22 86.0 5e-12 seq15 84.2 2e-11 seq41 82.4 6e-11 >seq148 Length=4887613 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| ||| | || |||| |||| ||| ||||| || || ||||| ||||| | Sbjct 4050772 TTCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAG 4050831 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || || | || || ||||||||||| ||| | || || ||||||||||| | Sbjct 4050832 AAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 4050891 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| || || |||||| ||||| | | | ||||||| ||| ||| Sbjct 4050892 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCA 4050951 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| | ||| ||||||||||| || | || || || || ||||||||||||| Sbjct 4050952 CTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTGA 4051005 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| || | |||| |||||||||||| || || || ||||| | | Sbjct 4050321 CCCCTC--AGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAA 4050378 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || |||||||| || || ||| | || || ||||||||||| || | Sbjct 4050379 GAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 4050438 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | | | ||||||| |||||| | Sbjct 4050439 TGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACCT 4050498 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||| ||||||||||| || | || || ||||| || ||||| Sbjct 4050499 CCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| ||||||||| || || || || || || | Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| ||||| ||| | || || ||||||||||| || Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| || || | | | ||||||| ||| ||| | Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||||||||| || | || || ||||| || |||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 >seq117 Length=6347111 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||||||| |||||||| ||||| | || || ||| | || |||||||| Sbjct 1554184 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGC 1554125 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| | | | || || ||||| ||||| || | |||||| || || |||||| Sbjct 1554124 TTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 1554065 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | | | ||||||| ||| ||| ||||| || ||||||||||| || Sbjct 1554064 GCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTC 1554005 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || | || ||||||||||||| Sbjct 1554004 AGGGTCTTCATGAAGATTTGCATTTTGA 1553977 >seq40 Length=22651954 Score = 113 bits (124), Expect = 4e-20 Identities = 168/237 (71%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||| | |||| || ||||| || ||||| ||||| | Sbjct 7366486 CCACCTCGCAGGCGAAGCACTAGGTGCAGGGTAGACTC----TGGATGTTGTAGTCAGAG 7366541 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| || | ||||||||||||||||| ||| | || || | ||||||||| ||| Sbjct 7366542 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 7366601 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | ||| || |||| ||||||| Sbjct 7366602 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 7366661 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 || | ||| ||||||||||| || | || || || || || ||||| | || |||| Sbjct 7366662 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATCTCTGCATCT 7366718 >seq12 Length=34595640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | | ||| | |||| || ||||| || || | ||| ||||| | Sbjct 22518595 CCACCTCGCAGGCGAAACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAG 22518536 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || |||||| | |||||||||||| |||| ||| | || || | ||||||||| ||| Sbjct 22518535 AGAGTTTGGCCATCCTCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 22518476 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || | | || | || || |||| | ||||| Sbjct 22518475 ATGCCCTCCTTGTCTTGGATTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCACC 22518416 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| ||||||||||| || Sbjct 22518415 TCGAGGGTGATGGTCTTGCCCGT 22518393 >seq85 Length=11339561 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| |||| ||||||||||| || ||||| ||||| | || Sbjct 11133860 CCCCTC--AGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACA 11133917 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | || |||||||| |||| ||| | || || ||||||||||| ||| | Sbjct 11133918 GGGTGCATCCATCTTCCAGCTGCTTGCTAGCAAAGATCAGCCTCTGCTGGTCAGTGGGGA 11133977 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| ||||||| |||||| ||||| | | || |||| ||| || | Sbjct 11133978 TGCCCGCCTTGTCTTGGATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGTTCAACCT 11134037 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | | ||||||||||| || | || || | || |||||||| Sbjct 11134038 TGAGGATGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATTTGCAT 11134083 >seq22 Length=29172479 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/222 (69%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||| |||||||| || | ||||| ||||| | || | | | | ||| Sbjct 11894360 AGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCC 11894419 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||| | ||| | || || | ||||||||| ||| | ||| |||||||| Sbjct 11894420 TCCAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 11894479 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | | || |||| ||||||| || | ||| |||| | Sbjct 11894480 TGGATTTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCC 11894539 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 ||||| || | || || | || || ||||| | || |||| Sbjct 11894540 TTGCCCGTCAGGGTCTTCAGGAAGATCTGCATCTCTGCATCT 11894581 >seq15 Length=34776858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| ||||| ||||||||||| || ||| | ||||| | |||||| | | || Sbjct 23700281 GAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAGACAGGGTGCGTCCATC 23700340 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| |||| ||| | || || |||||||||| ||| | || |||||||| Sbjct 23700341 TTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGT-TGGGGGGATGCTCTCCTTGTC 23700399 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | || |||| ||| || ||| | ||| ||| | Sbjct 23700400 TTGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTACTTCGAGGGTGATGAT 23700459 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || || | || |||||||| Sbjct 23700460 GTTGCCAGTAAGGGTCTTCATGAAGATTTGCAT 23700492 >seq41 Length=20498451 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/142 (73%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| |||| ||||||||||| || || || ||||| | || Sbjct 848189 CCCCTC--AGGCAGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACA 848246 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | || |||||||| ||||| ||| | || || ||||| ||||| ||| | Sbjct 848247 GGGTGCATCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCAGGGGGGA 848306 Query 21070 CGCCTTCCTTGTCGGCGATCTT 21091 || |||||||| |||||| Sbjct 848307 TTCCCTCCTTGTCTTGGATCTT 848328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422237436364964