Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq148 86.0 5e-12 seq117 82.4 6e-11 seq16 82.4 6e-11 >seq148 Length=4887613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 25008 TTGTCATTTATAAGTAATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAA 25067 ||||||||| ||| || || || ||||||||||| ||| | || || |||| ||||| Sbjct 4051024 TTGTCATTT-TAATTAC-AG-GTCAAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAG 4050968 Query 25068 ACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCC 25127 ||||| ||| ||| ||||||| || || | | || | ||| || || Sbjct 4050967 ACCATCACCCTAGAAGTGGAACCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAG 4050908 Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || || || || || || |||||||| |||||||| | ||| Sbjct 4050907 GATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTTGAA 4050848 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | ||| | | || ||||| || || || || |||||||| ||| |||| Sbjct 4050847 GATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCTACTCTGCACCTGGT 4050792 >seq117 Length=6347111 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25029 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 25088 || ||||||||||| ||||| || || |||| ||||| ||||| || ||| |||| Sbjct 1553976 GTCAAAATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAA 1554035 Query 25089 CCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 25148 ||| || || | | || | ||| || || ||||||||||| | || Sbjct 1554036 CCCAGTGATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCT 1554095 Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || || |||||| | ||||| || |||||||| | | ||| | | || Sbjct 1554096 GACCACCAGAGGCTCATCTTTACAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGAC 1554155 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| ||||| ||||| || ||||| ||| Sbjct 1554156 TACAACATTCAGAAGGAGTCCACTCTGCAC 1554185 >seq16 Length=31725842 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || || | ||||| | ||||| || ||||| || ||| |||||| Sbjct 21647254 AAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 21647195 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | || | || || || ||||| ||||| | || ||| Sbjct 21647194 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21647135 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||||| || |||||||| || || ||| |||||||| ||| || | |||||| Sbjct 21647134 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTAC 21647075 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || || ||||| | ||||| |||| || || || Sbjct 21647074 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATTCCGTGGTGG 21647025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410775627147806